Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02139 ATGAAGAAGGAGGAGGTGCAAGCAGCTGATTTGAGGGTGCGAGAAGAAATTATCCGACCGTTACCCATTACAAATGTTCAAAGAATCATGCGTCGAATGATTCCAAAACATGGAAAGATAAGCGATGAAAGCAAGGAATGTATGGTTGAATGTGTTTCTGAATTCATTAGCTTCATTACTACTGAAGCTAATTATCACTGTAAATTGGATCATAGAACCACAATTACTGCTGAAGATTTGATCAATACTATGAGAAGATTGGGTTTTGATTTTTATGTTGAGGATTCTACGCGCTACATTCAACGCTATCGTCACATTGAATGTGGTGCTAGTGTGGGTCCATATGTTGAACAAACATGTGGACCCACACACAAAAATATAGCACCACCGTCGGTGCTAGAGACTTTTCAAGATCATGACTTACCAATGGATCCAATTGTGTTTCCAGACCCAAGAGAATTATTGGGTGCAATTGTTGGAGATGAAGAATTTTGTGGTAGTGACAACTCAAGTGATGGAAGCTTTGATCTTGATGCTTTTCTTAATAGTGATGACTGA 558 0.3889 MKKEEVQAADLRVREEIIRPLPITNVQRIMRRMIPKHGKISDESKECMVECVSEFISFITTEANYHCKLDHRTTITAEDLINTMRRLGFDFYVEDSTRYIQRYRHIECGASVGPYVEQTCGPTHKNIAPPSVLETFQDHDLPMDPIVFPDPRELLGAIVGDEEFCGSDNSSDGSFDLDAFLNSDD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02139 185 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 113 - -
Car02g02139 185 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
Car02g02139 185 Gene3D Histone, subunit A 15 111 IPR009072 GO:0046982
Car02g02139 185 SUPERFAMILY Histone-fold 20 107 IPR009072 GO:0046982
Car02g02139 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 21 81 IPR003958 -
Car02g02139 185 PRINTS CCAAT-binding transcription factor subunit A signature 48 66 - -
Car02g02139 185 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Car02g02139 185 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02139 Car-Chr2 51659307 51659864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02139 13 107 CCAAT-HAP3 Transcription Factor Family AT5G47670 58.947 1.92e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car02g02139 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02139 K08065 - bvg:104886848 117.087