Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02129 ATGGCCAACGACGATACAAAGGAGCCCTTGCTATTGGGATCACAGGAAACGGGAGCTCAAAAGGCGAAACGACATTTAAACCAAAGAAGGTTCCTACGTTCTAGAAGTGCCCCTGACATAGATCATGCTCCTCTGGTGACAAACGACAGTGAATCGATTCCCCTTTCTGAGTCCATATTTGGGATTTTACATCCAAGTTTAAAAAAGGTGGCTATATATCTTATGGTCTATTTAGGTGTAGGAGCTATAATCTTCTACCTTGTTAGGAACCAGATCAAGGGACTGAAAACACACAGATTCCTTGATGCCATATACTTCACAATTGTGACAATGACTACTGTTGGATATGGAGACCTTGTTCCCGATAGCGACCTTACGAAAATACTTGCGTGCGCTTTTGTTTTCTCTGGAATGGCATTGATGGGAATAATCCTAAGCAAAGCAGCAGATTACTTGGTTGAGAAGCAAGAAGTTTTGCTAGTTAAAGCAATGCACATGCACGAAAAAGTTGGTCCAAGTGAAATTTTAAAGGAGCTTGAGATGAATAAAACAAGATACAAATTTTTTCTGGTCTTTTCCCTTCTTCTGATTCTGATTATAGTGGGGACAATCTTCTTGGTCACTGTTGAGAAATTGGAAATTATTGATGCCTTTTACTGTGTTTGTTCAACAATTACAACTCTTGGTTATGGAGATAAAAGTTTCTCAACTGAAGCTGGAAGAATATTTGCAGTGTTTTGGATATTAACAGGTACTATTTGTTTAGCTCAGTTTTTCCTCTACATGGCTGAACTAAACACTGAAAGCAGACAAAAGGCACTTGTCCATTGGGTTCTTACAAGAAAAACGACCAATTTTGATTTGGAAGCTGCAGATCTTGATCATGATGGGGTTGTTGGGGCTGCTGAATTtgttatttataagctgaaagagatggggaagattagtcaagaagatatatcactTGTGATGAAGGAGTTTGAACAGCTTGACATTGATCAGTCTGGTACACTGTCTGTTTCTGATATAACACTTGCTCAATCATCTTAA 1050 0.3724 MANDDTKEPLLLGSQETGAQKAKRHLNQRRFLRSRSAPDIDHAPLVTNDSESIPLSESIFGILHPSLKKVAIYLMVYLGVGAIIFYLVRNQIKGLKTHRFLDAIYFTIVTMTTVGYGDLVPDSDLTKILACAFVFSGMALMGIILSKAADYLVEKQEVLLVKAMHMHEKVGPSEILKELEMNKTRYKFFLVFSLLLILIIVGTIFLVTVEKLEIIDAFYCVCSTITTLGYGDKSFSTEAGRIFAVFWILTGTICLAQFFLYMAELNTESRQKALVHWVLTRKTTNFDLEAADLDHDGVVGAAEFVIYKLKEMGKISQEDISLVMKEFEQLDIDQSGTLSVSDITLAQSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02129 349 Gene3D - 170 275 - -
Car02g02129 349 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Car02g02129 349 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 19 342 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car02g02129 349 SUPERFAMILY EF-hand 274 345 IPR011992 -
Car02g02129 349 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car02g02129 349 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Car02g02129 349 MobiDBLite consensus disorder prediction 1 22 - -
Car02g02129 349 Gene3D - 63 158 - -
Car02g02129 349 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 19 342 - -
Car02g02129 349 Pfam Ion channel 194 265 IPR013099 -
Car02g02129 349 Pfam Ion channel 72 153 IPR013099 -
Car02g02129 349 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Car02g02129 349 SUPERFAMILY Voltage-gated potassium channels 179 284 - -
Car02g02129 349 SUPERFAMILY Voltage-gated potassium channels 68 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02129 Car-Chr2 51614001 51616906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02129 54 349 Ion Channels AT5G55630 66.554 2.46e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02129 K05389 - gmx:100777388 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02129 02 51614001 51616906 Car02g02129 02 51614001 51616906 ECH