Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02117 ATGTTGTTTGTTTTGTCTTCTATTTCACTCACGAACTTTTCTACTGATTTTCTTCTAAAACCCATTTTCCTTCATGGGTTATCTAGTATTCTCCATCTAGTGTTGCTTGTTGGGGTTTTGGTTTCATGTGTTTGGAAAAAAATCACAACTTGTGTTGTGAATGAGTCTGAGAAAAAATATAGTAATACTTTGTTTAAAGTGACAAAgttttgttcttttggtttttcttctttcaattttgttctgtttctgtttAATTGCTTCTACTGGTATACTAGTGGTTGGCCAGAAGAAAAAGTTGTTACCCTTTTTGATTTAGCTGTCAAAACAGTTGCTTGGTGTGTTGTTTGTGTTTGTTTCCACAAAGGGTTCTTCTTTTTCTTGAGTTCATGTCAAAGAAGAAGGTTTCCATTTTTCTTCAGAGCTTGGTGTGTTTTCTATCTCTTTGTTTCATGTTATTGCTTTGTGGTGGACATTGTTGTTCTTTATGAATTTCATGTTGCTTTAACTGCTCAATGCATGGTTTCTGATGTGGTATCTGTTTGTGTGAGTTTGTTCTTCTGTTATGTGGGATATTTTGTGAAAAGTAGGAGTGAAGAAGGTGATAGAACTCTTCAAGAGCCTCTTTTGAATGGTGGTTCACATGTTGGTAATGGTGATGATAAAGTTAATGCTTTGGATTTAAAAGAGACCAAAGGAAGTGACACTGTTACCCCTTTCTCAAATGCTGGAATTTTGAGCCTTCTTACCTTCGCTTGGGTGGGGCCCCTTATAGCAGTTGGCAATAAGAAAACCTTGGACCTTGAGGATGTTCCTCAGTTGGATAGTGGAGATAGTGTGTTTGGAGCTTTTCCAACTTTTAGAGACAAACTTGATGCTGATTGTGGTGCAATCAATAGAGTAACCACACTTAAGTTGGTGAAGTCATTAATAATCTCAGGGTGGAAAGAAATTCTTTTCACTGCTTTTCTTGCATTGATAAACACTTTTGCTTCTTATGTTGGTCCTTATCTTATTGATTCTTTCGTTCAATACCTTGATGGACAAAGGCTATATGAGAATCAAGGCTATGCCTTGGTTTCTGCATTCTTCTTTGCAAAGCTTGTAGAGTGTTTTACACAAAGACATTGGTTCTTTAGGTTGCAGCAACTCGGACTTCGAATTCGAGCACTGCTCGTGACTATGATATATAATAAAGCCTTAACACTTTCATGTCAATCAAGGCAGGGCCACACTTCTGGTGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGTGTTTTCAGTTGGTACATGCATGATTTATGGTTAGTAGTTTTGCAAGTTACATTGGCCTTGTTGATTTTGTATAAAAACCTTGGTGTTGCTTCAGTTGCTGCTTTTGCTGCAACTATCATTGTTATGTTGGCAAATGTTCCATTAGGATCATTGCAAGAGAAGTTTCAAAGTAAGTTGATGGAGTCAAAGGATACCAGAATGAAAACAACATCTGAAATTTTAAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTATCTAAAATAACTGAGCTCAGGAACAATGAGCAAAACTGGTTGAAGAAATTTCTTTATACTTCAGCCATGACTACATTTGTCTTTTGGGGTGCACCTACATTTGTTTCTGTGGCTACTTTTGGCACTTGCATGCTTATAGGGATTCCTCTTGAATCAGGGAAGATTCTGTCAGCACTTGCAACATTCAGGATTCTTCAAGAGCCTATTTATAATCTTCCTGATGTTATTTCAATGATAGCACAAACTAAAGTTTCTCTTGATAGGATCGCATCGTACCTTCGTCTCAATGACTTGCAGTCCGATGTTGTAGAGAATCTTCCTCCCGGTAGTTCCGATACAGCAATCGAAGTGGTCGATGGAAACTTTTCTTGGGATTTATCTTCTACTAATCCAACTTTGCAGAACATAAATGTAAGAGTTTCTCATGGCATGAAGGTTGCTGTTTGTGGTACTGTTGGATCAGGGAAATCTACTCTACTTTCTTGTGTATTAGGAGAAGTACCAAAGATATCAGGTATCCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATTCAAAGTGGAAAGATAGAGGATAATATATTGTTTGGTAAGGACATGGATAGGGAAAGGTATGAGAAGGTTCTTGAAGCATGTTCCTTAAAGAAGGATCTAGAGATTTTGTCATTTGGTGATCAAACAGTTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGCGCTCTTTACCAAGATGCTGATATGTATCTATTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGCTCTCACCTTTTCAAGGAATGCTTGCTGGGTTATTTAAGTTCAAAAACAGTTGTTTATATTACTCATCAAGTGGAGTTCTTACCTACTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAAAGTGGAAAGTATGCCGATCTGCTTAACATTGGGACTGATTTTATGGAACTTGTTGGTGCACATAGAGAAGCTTTGTCTACACTTGAAACATTGGATGGAGGAAAAGAATCTAATGAAATAAATACATTGGAACAAGATGTAAGCATCTCTGTCAGTGTCGCTCATGATGTCAAAGAAAAGGAGACAATCAAAGATGAGCAAAATGATAAAGGTGAACCGAAAGGCCAACTTGTTCAAGAAGAAGAAAGGGAGAAAGGTAAAGTTGGTTTTTCAGTGTATTGGAAGTATATCACAACTGCATATGGAGGAGCTCTTGTACCGTTCATATTACTGGCTCAGATTCTTTTTCAATTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCTACTCCCATTTCAGCAGATGTGGAAGCACCTGTTGAAGGCACAACTCTTATAGAAGTCTATGTTGCTTTGGCCATTGGAAGTGCTTTATGCATTCTTGTTAGAGCATTGTTACTTGTTACAGCTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTGTCTATTTTTCGTGCTCCGATGTCATTTTTTGATTCTACTCCAAGCGGTCGAATCCTTAACCGAGCTTCTACAGACCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGTTCATTTGCCTTCTCCTTGATCCAACTTTTCGGAATCATAGTAGTGATGTCCCAGGTTGCATGGCAAGTGTTCATTGTTTTTATACCCGTGATAGCCATCAGCATTTGGTATCAGCGATTTTACTTACCATCAGCACGTGAACTATCACGTTTGGTTGGAGTGTGCAAAGCTCCAATCATTCAACACTTTGCAGAAACAATTTCTGGTACTACAACCATTAGAAGCTTTGGTCAACAGTCGAGATTTCATGAAACGAATATGAAACTGACCGATGGGTATTCTCGTCCAAAGTTCAATATTGCTGCTGCTATGGAATGGTTATGCATCCGCTTAGATATGCTGTCTTCCATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGAATCATAAATCCAGGCATTGCTGGTCTAGCTGTTACCTATGGTCTAAATTTAAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCGGTAGAAAGGATGCTTCAGTATACAAACATTCCTAGTGAGCCTCCTCTAGTTTTAGAAGAAGAAAATAGACCAGATCCTTCTTGGCCATCATACGGCGAGGTTGATGTACGGAACTTGCAGGTTCGATATGCTCCTCATCTTCCGCTCGTGTTGCGTGGCCTGACATGCACATTTCGTGGAGGATTGAGAACTGGCATTGTTGGTAGAACAGGTAGCGGCAAATCAACTCTTATACAAACACTATTTCGACTTGTTGAACCTACTGCCGGGGAAGTTATCATAGACGGCATCAACATATCTACAATTGGGTTGCATGATTTGAGGTCTAGACTAAGCATTATTCCCCAGGATCCGACAATGTTTGAGGGGACTGTGAGAAGTAATCTCGATCCTCTGGAAGAGTACACCGATGAACAAATATGGGAGGCCTTGGATAAGTGTCAACTGGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTCGATTCTGCAGTTAGTGAGAATGGTGATAATTGGAGCATGGGTCAGAGGCAGTTGGTTTGTCTTGGTAGGGTTCTTCTTAAGAAGAGCAAGATTTTGGTGCTTGATGAAGCCACTGCATCAGTTGACACAGCTACAGATAATTTAATTCAGCAAACTCTTAAGCAGCATTTCTCCGACTCTACCGTCATTACCATCGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTACTTCTTAGTCAAGGGCGTATTGAGGAGTATGACTCTCCAACCACATTGCTAGAGGATAAGTCATCATCTTTTGCTAAGCTTGTTGCAGAGTATACCATGAGGTCCAACTCCAGTTTTGAGAAATCTGTTCATCAATGA 4539 0.386 MLFVLSSISLTNFSTDFLLKPIFLHGLSSILHLVLLVGVLVSCVWKKITTCVVNESEKKYSNTLFKVTKFCSFGFSSFNFVLFLFNCFYWYTSGWPEEKVVTLFDLAVKTVAWCVVCVCFHKGFFFFLSSCQRRRFPFFFRAWCVFYLFVSCYCFVVDIVVLYEFHVALTAQCMVSDVVSVCVSLFFCYVGYFVKSRSEEGDRTLQEPLLNGGSHVGNGDDKVNALDLKETKGSDTVTPFSNAGILSLLTFAWVGPLIAVGNKKTLDLEDVPQLDSGDSVFGAFPTFRDKLDADCGAINRVTTLKLVKSLIISGWKEILFTAFLALINTFASYVGPYLIDSFVQYLDGQRLYENQGYALVSAFFFAKLVECFTQRHWFFRLQQLGLRIRALLVTMIYNKALTLSCQSRQGHTSGEIINFMTVDAERVGVFSWYMHDLWLVVLQVTLALLILYKNLGVASVAAFAATIIVMLANVPLGSLQEKFQSKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITELRNNEQNWLKKFLYTSAMTTFVFWGAPTFVSVATFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDVISMIAQTKVSLDRIASYLRLNDLQSDVVENLPPGSSDTAIEVVDGNFSWDLSSTNPTLQNINVRVSHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGKDMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADMYLFDDPFSAVDAHTGSHLFKECLLGYLSSKTVVYITHQVEFLPTADLILVMKDGKITQSGKYADLLNIGTDFMELVGAHREALSTLETLDGGKESNEINTLEQDVSISVSVAHDVKEKETIKDEQNDKGEPKGQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILFQFLQIGSNYWMAWATPISADVEAPVEGTTLIEVYVALAIGSALCILVRALLLVTAGYKTATILFNKMHLSIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSLIQLFGIIVVMSQVAWQVFIVFIPVIAISIWYQRFYLPSARELSRLVGVCKAPIIQHFAETISGTTTIRSFGQQSRFHETNMKLTDGYSRPKFNIAAAMEWLCIRLDMLSSITFAFSLIFLISIPQGIINPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERMLQYTNIPSEPPLVLEEENRPDPSWPSYGEVDVRNLQVRYAPHLPLVLRGLTCTFRGGLRTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDGINISTIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVSENGDNWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLKQHFSDSTVITIAHRITSVLDSDMVLLLSQGRIEEYDSPTTLLEDKSSSFAKLVAEYTMRSNSSFEKSVHQ 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02117 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 319 599 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car02g02117 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1254 1491 IPR027417 -
Car02g02117 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 633 856 IPR003439 GO:0005524
Car02g02117 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 101 1508 - -
Car02g02117 1512 Pfam ABC transporter 1280 1427 IPR003439 GO:0005524
Car02g02117 1512 Pfam ABC transporter 651 785 IPR003439 GO:0005524
Car02g02117 1512 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 101 1508 - -
Car02g02117 1512 CDD ABC_6TM_ABCC_D1 320 607 IPR044746 GO:0140359
Car02g02117 1512 Gene3D - 615 873 IPR027417 -
Car02g02117 1512 Gene3D ABC transporter type 1, transmembrane domain 299 614 IPR036640 GO:0005524|GO:0016021
Car02g02117 1512 Gene3D ABC transporter type 1, transmembrane domain 904 1242 IPR036640 GO:0005524|GO:0016021
Car02g02117 1512 CDD ABC_6TM_ABCC_D2 942 1236 IPR044726 GO:0140359
Car02g02117 1512 Pfam ABC transporter transmembrane region 944 1197 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car02g02117 1512 Pfam ABC transporter transmembrane region 319 586 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car02g02117 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 944 1224 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car02g02117 1512 Gene3D - 1244 1498 IPR027417 -
Car02g02117 1512 SMART AAA_5 660 833 IPR003593 -
Car02g02117 1512 SMART AAA_5 1288 1480 IPR003593 -
Car02g02117 1512 MobiDBLite consensus disorder prediction 897 917 - -
Car02g02117 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 630 855 IPR027417 -
Car02g02117 1512 SUPERFAMILY ABC transporter transmembrane region 942 1243 IPR036640 GO:0005524|GO:0016021
Car02g02117 1512 SUPERFAMILY ABC transporter transmembrane region 310 611 IPR036640 GO:0005524|GO:0016021
Car02g02117 1512 CDD ABCC_MRP_domain1 633 833 - -
Car02g02117 1512 ProSitePatterns ABC transporters family signature. 758 772 IPR017871 GO:0005524
Car02g02117 1512 CDD ABCC_MRP_domain2 1260 1480 - -
Car02g02117 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1264 1496 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02117 Car-Chr2 51535033 51541806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02117 633 863 Calmodulin-binding Proteins AT2G36910 29.482 3.46e-23 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02117 - K05666 gmx:100777836 2424.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02117 02 51535033 51541806 Car02g02117 02 51535033 51541806 ECH
Car02g02117 02 51535033 51541806 Car05g01100 05 52762870 52771001 PCT