Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02112 ATGGATATTTCAGACTACACAAGAATTGTTTATGATAGAATTCAGAAATTTGAGCCTGAGAATGCTGCTAAGATAATTGGATATATTCTTATGCAAGAACATGGTGACCAAGAACTGGCTAGATTAGCTTCTTGTACTGACCATATCTTCTATGAAGTAGTATCTAAAGCCAAAACTGAGATTCATATGATGGCTGTTAAATCATTGATGACTCCGATTTCGccaccgccactgccaccaccaccaccaccaccaccTAATGTTATTACCCCTCAACAACAAGGTTATAGGTATTTACCACCACCACCAGGCTTTCCGGTTCGAAATTCCATTTGGGGTAGACAACCTGGTAACCATGTAGATCAAGAATATATGAGAGAAATCATTAGACCAAAACAATTGTTGTGTTTGGAGAGTAGTCATTTAGATCATGTAAATACCAGAAATTGTGGAGGTATTGTTGTCAATGATTACAATGGCTTAGATGcttcttcttcttcttctGTCGATTTGGGTGGAAATTCTAGCAGCAGAAGGTTAGATGAAATTCAACCCAAGAACTGTCACTATTTCAGAAAAGGTTTTTGTAAGCATGGAAGTAACTGTAGATACATTCATTGTCAAGTTCCTCATGAGAGCTTCCCTCATGATAGTGCtaataataataataatagtaataataataataataatGAGGAAAAAGTGTTATTAGCACAGATAGAGTCTGAAATTATTGAGCTTCTTAAGCAGAGAAGAGGCAATCCTATATCAATTGCTTCTTTGCCATCAGCTTACTATGATAAATATAAAAAGCGACTCGAAGCTCATGGTTATTTAACTGAGAGCAAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGTGCAACTTAATAGTATTCGGCTGATCGACAGGCCTCATGGGCAGCATTCTGTGATTCTGGCTGAAGATGCTCCAAAATACATTCAAAAGGGAGATTCTGTTCAAAATATTAGTGCCTCGCGGCAAATATATTTGACTTTTCCAGCTGACAGCACTTTCACTGAAGAGGATGTCGCAAAATACTTCAACACAATTGGATTTGTTGAAGATGTTAGGATTCCATGCCAGGAGAAAAGGATGTTTGGTTTTGTAACATTTGCTGATCCCAAAACCGTTAGAATGATTTTGGATAACGGAAATCCTCATTATGTTTGTGGGTCTCGGGTGCTTGTGAAACCTTATAGGGAGAGGGCAAGAGTTGAAAGTTGCAGGAGGCACCAAGATATACTAGATATATTAGACCAACTTGATAATGGTCGAAATAACTCAGAAAACATGAACTATGAATGCGACAGAGTTTCAAGAAATAATGGAAACCATCAATATCAAAGGAGACAGTTGATTGAAGAAGAGGAGGAGCAAGTCTTAGAGTTGGAAAGGAGACGTCTTGCGCAACTGCATTTTAGCCAAACTCGAAGACCGCTTCCTTTGCCGATTTCACCTCCTTTGCCGCTTTCACCTCGTTTGCCCGTCTCATCTCCTTCGTCCGTTTACTCTAATTTTGGCTTCTCCATAGATTTGTGCCTAGATGAGTTAAAAGATGAGTTGAAAGCTCAAAATGATCATTTCAAATTCAATTCACAGCCTGTATTAACTGTTGCATTGGATAACAATGTCAAAAACACAGATAAAGATTCTTCTGAAGGGACTAGCAATGAAGGATTTCATCTCCCTGATAGTCCATTTTCATTTCCAACAATTGAAAGTGATATATTTAAGAAGTGA 1773 0.3638 MDISDYTRIVYDRIQKFEPENAAKIIGYILMQEHGDQELARLASCTDHIFYEVVSKAKTEIHMMAVKSLMTPISPPPLPPPPPPPPNVITPQQQGYRYLPPPPGFPVRNSIWGRQPGNHVDQEYMREIIRPKQLLCLESSHLDHVNTRNCGGIVVNDYNGLDASSSSSVDLGGNSSSRRLDEIQPKNCHYFRKGFCKHGSNCRYIHCQVPHESFPHDSANNNNNSNNNNNNEEKVLLAQIESEIIELLKQRRGNPISIASLPSAYYDKYKKRLEAHGYLTESKRHGKSGYSLTKLLVQLNSIRLIDRPHGQHSVILAEDAPKYIQKGDSVQNISASRQIYLTFPADSTFTEEDVAKYFNTIGFVEDVRIPCQEKRMFGFVTFADPKTVRMILDNGNPHYVCGSRVLVKPYRERARVESCRRHQDILDILDQLDNGRNNSENMNYECDRVSRNNGNHQYQRRQLIEEEEEQVLELERRRLAQLHFSQTRRPLPLPISPPLPLSPRLPVSSPSSVYSNFGFSIDLCLDELKDELKAQNDHFKFNSQPVLTVALDNNVKNTDKDSSEGTSNEGFHLPDSPFSFPTIESDIFKK 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02112 590 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 402 IPR000504 GO:0003723
Car02g02112 590 Gene3D - 337 416 IPR012677 -
Car02g02112 590 Coils Coil 230 250 - -
Car02g02112 590 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 208 IPR000571 GO:0046872
Car02g02112 590 ProSiteProfiles Zinc finger C3H1-type profile. 182 209 IPR000571 GO:0046872
Car02g02112 590 ProSiteProfiles OST-type HTH domain profile. 236 318 IPR025605 -
Car02g02112 590 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 487 - -
Car02g02112 590 SMART rrm1_1 338 408 IPR000504 GO:0003723
Car02g02112 590 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 412 IPR000504 GO:0003723
Car02g02112 590 MobiDBLite consensus disorder prediction 557 590 - -
Car02g02112 590 CDD RRM_AtC3H46_like 339 408 IPR034365 -
Car02g02112 590 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 487 - -
Car02g02112 590 Pfam OST-HTH/LOTUS domain 237 314 IPR025605 -
Car02g02112 590 SUPERFAMILY RNA-binding domain, RBD 348 424 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02112 Car-Chr2 51509017 51512891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02112 - - cam:101504012 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02112 02 51509017 51512891 Car02g02112 02 51509017 51512891 ECH
Car05g01097 05 52714281 52715457 Car02g02112 02 51509017 51512891 PCT