Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02104 ATGGAAGCTGCCACCACCAACTCCGGCGCACCACACTCGAGTTCGGAGCTCCATGTCGAAGGGACACCCCATGATCCAAACCAAACCGGGTCGGGTCAAAATTCGATGGCAAGATACAAACTGATGTCGCCGGCGAAGCTTCCGATCTCAAGGTCGCCGTGTATCACAATACCTCCGGGGTTTAGTCCGACGTCGTTTTTGGAGTCCCCAGTTCTTCTTTCCAACATGAAGGTGGAGCCTTCACCGACTACAGGGTCCCTTCCTCAGCTTCTTCAAACTTTGCATGGTTCTATGCCTTCTGCCACATTCCCTTTAACCACAACATGCTTCAATACCGGCACTGTTAATGACAGAAAATCAAGTTTCTTTGAGTTTAAACCACATGAAAGAAATATGGTTCCTGCAGACTTCACCAACCATGTAAGTGAACAATCTACTCAAGTAGAAAGTCAAGGAAAAGGTCAATCATTTGGATCCTCGCCTTTAATCGAAAATGAGATTGCTGATCAATCTAATGAATTAAGCCTATCCTCGCCCGTTCAAATGGTTAGTTCCGGGGCCAGTGCTCATGTTGATGTCAATTTGGATGAATTAAACCACAAAGGCAACACAACTAATGCACCCGAAAAAGTATCAAATGATGGATACAATTGGCGAAAATATGGTCAAAAACATGTTAAAGGGAGTGAGTTTCCGCGCAGCTATTACAAATGTACACATCCTAACTGCGAAGTGAAAAAACTTTTCGAACGCTCGGATGAAGGTCAAATCACCGAAATAATTTATAAGGGAACACATGATCATCCTAAACCTCAACCAAGCAACCGATACTCTGCCGGTTCTATTATGTCTATGCAAGGAGAGAGATCTGATAGGGCATCTTCTTTGGCTGGCCGAGATGTTGAACCCAACAGGACTCCCGAGCAATCAACTGTGGCAACAAATGATCATAGTCTAGAGGGTGCTAGATTTGCGTCAACCAGGATAAATGACGAGGTTGATGATGACGATATCTTCTCAAAGAGAAGAAAAATGGAACTCGGAAATGCTGACATCATTCCTATAGTTAAGCCTATCcgagagccacgggttgttgtacaaactacgagtgaagttgatatattggatgatggataccgctggcgtaaatatgggcagaaagtggtgaggggaaatcctaacccaagGAGTTATTACAAATGCACAAATGCCGGTTGTCCCGTTAGGAAACACGTGGAGAGGGCATCTCATGATCCGAAAGCTGTAATAACAACATATGAGGGAAAACACAATCATGATGTACCTGCTGCAAAGAATAGTAGCCATGACATGGCAGGACATGCAGCTTCTGGTGGACAAACAAGGATAAAGTTCGAAGAATGCGATACCATTAGTCTCGACCTTGGGATGGGAATCAGTTCACCAGCTGAAAATAGATCAAACGGCCAAGGGAAAATGCTGTTCTCTGAATTGGCGAACAGTCAAACTCCCACAAGCAATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCATCATACTATGGTGTTCTAAATAACAGTTCGAATCTGTTTGGTTCTAGAGAAAATAGGAACGATGGTTCGTCTTTAAATCATTCATCGTATCCTTGCTCGCAAAGCATGGGAAGAATACTTATGGGGCCATGA 1668 0.4083 MEAATTNSGAPHSSSELHVEGTPHDPNQTGSGQNSMARYKLMSPAKLPISRSPCITIPPGFSPTSFLESPVLLSNMKVEPSPTTGSLPQLLQTLHGSMPSATFPLTTTCFNTGTVNDRKSSFFEFKPHERNMVPADFTNHVSEQSTQVESQGKGQSFGSSPLIENEIADQSNELSLSSPVQMVSSGASAHVDVNLDELNHKGNTTNAPEKVSNDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSDEGQITEIIYKGTHDHPKPQPSNRYSAGSIMSMQGERSDRASSLAGRDVEPNRTPEQSTVATNDHSLEGARFASTRINDEVDDDDIFSKRRKMELGNADIIPIVKPIREPRVVVQTTSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAAKNSSHDMAGHAASGGQTRIKFEECDTISLDLGMGISSPAENRSNGQGKMLFSELANSQTPTSNSNFKFVHTTSAPSYYGVLNNSSNLFGSRENRNDGSSLNHSSYPCSQSMGRILMGP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02104 555 MobiDBLite consensus disorder prediction 1 35 - -
Car02g02104 555 SUPERFAMILY WRKY DNA-binding domain 210 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 MobiDBLite consensus disorder prediction 526 547 - -
Car02g02104 555 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 Pfam WRKY DNA -binding domain 213 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 535 IPR044810 GO:0003700
Car02g02104 555 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 Gene3D WRKY domain 199 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 Gene3D WRKY domain 360 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 ProSiteProfiles WRKY domain profile. 207 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 MobiDBLite consensus disorder prediction 526 555 - -
Car02g02104 555 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 28 535 - -
Car02g02104 555 SMART WRKY_cls 212 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car02g02104 555 MobiDBLite consensus disorder prediction 284 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02104 Car-Chr2 51462620 51467016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02104 42 555 WRKY Transcription Factor Family AT4G26640 55.473 3.01e-178 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car02g02104 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02104 - - gmx:100816583 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02104 02 51462620 51467016 Car02g02104 02 51462620 51467016 ECH
Car05g01094 05 52660198 52667207 Car02g02104 02 51462620 51467016 PCT