Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car02g02085 | ATGAAACGGCGATTCGCGTCATTAGATGATGAAACTGAATCTGAAACCGACTTTCAGTCACTTCTTGTGTCGAATTATCATCTTGAAGATGACGATGATGAACCTGTGTCTTTTTCTGTTTTGCCGATTCAATGGAGTGATTCCGAGATTTCTAAGGTTAATGATGTAAATAAGGGCCATGTGTTCTTACATGGATCGGCTGATAATGGGTTGCAGAAGATTTTCATGCAGGTTACTGCTTGGAGGTTTGATATTTCAGGTTTGAAACCTGTGGTATCGTTGTTATCTAAGGATAAAAGGTGGATTAAGCTTCAGAAACCAAGGAAGAGTTTTATGGATACTGTGAAGAATGTGTTAATCACGCTTTATTTTCTTCATTGTGTTAAGAAAAAACCTAGGTTATCGTCCACATCTTTTTGGAGTAGCTTGTGTAGGGATAGGGATTTGAGCTCTTATGGGTTTAAGCCTTCACAAAAGGATTTGTTGGATCATATGACTTTGATTGGTGAAGCTACCAAAAGAGATGCTGTTTTAGCTCGGTCTAAGCTTTTGCTCACAGTTTTGGGGGACAAGCCAGAGGATCAAAGACCATCTGATGAGGAATTTGAAGATTTGGCTCAACCTGGAATTATAGTCAAATATATTGACAATGATATCATAGATGAGGCTAATGAAGACTCAGAAGTAGACGAAAATTTATTTGATAATGTTTGTGCATTTTGTGACAATGGCGGTAATCTTTTGTGTTGTGATGGAGCTTGCATGAGATCATTTCATGCTACTAAGCAGGATGGCAAGGATTCTTTTTGTGTTTCTCTTGGTCTTACGCCGAAGGAAGTTGATGAAATTCAAAATTTTTATTGTAAGAATTGTGAAAATCGTCAGCATCAATGCTTTGCATGTGGCAAGCTGGGTTCTTCTGATAAAGATAACGGCGCTGAGGTTTTTAAATGTTCTTCTGAGACCTGTGACCGCTTTTATCATCCACATTGTGTTGCAAAGTTACTTCCCAAGGTAGTCAAGCATGTTGCCGAGGATCTTGAGAAAAATATTGCTGACGGGAAGCCCTTTACTTGTCCCGTTCACTTTTGCTGTGTCTGTAAAGGATTAGAAAATAAGGCGGAACCTGAGTTGCAATTTGCAATTTGTAATCGTTGTCCAAAGTCATATCATCGCAAATGTTTGCCAAGAGGGATCGCTTTTGATGACATCAATGGTTTTAAATTAAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGCATTCTTATATATTGCTTAAATCATGAGATCAATGATAAACTTGGGACTCCTGTAAGAGATCATATAAAATTCCCCAACACCAGAGCTACTGTTCGGGAAATTAATACCTCCAATAAGAGGATAAAGCATGCAACTAAAGAGGGAGATACATTGAAGAACAATGTTAGTTTTGTTAAATCATCCGGCAAGGGCTCTGCAAAAGGATCTAAAGTTACAGGAGAACTGCCTTCCAGTAAAATTGATAGCAAGAAGTCTTCTGAAAAGATTAATTCTGGTTCAGATATTTCAAGGACACCCATATCAAAGGAAATACCAAGTAGTCGTTTGACTGAAAACAAGAATTCAGTCTCAAAGAATTCGTCTGATAAGATGATTTCTGGTTCACATATTTCGAAGAAAACGAAATCAAATGAAATATCAAGAAGGCCTTTGACTGAAAACAAGAAGTCAATCTCAAAGAAATTTGAAATGCCCAACTGTGAGGAAAACAACCACCTAACTGGTGAGAAATTATGTGCTCCTATGGATAAAGATTCTGAGCAAATCAAGAATGACGATCAGGTTGATAATAACAATACCCTGTTCGTCAAGCCTATTAGAAGTCTATTTCCTCCACCTGACGCCGATTCAGAAAAGGGTTTGGTGGATTCATTTAAAGAAGCTAGATCCTCACTATTGTTGGAGGGTAAGATAGAAAAACACAAGATGGGAGATGTTGAGGATAAAACCATTACAATGGGGAAGCGGGAAGACTCAGGTGACTTGACTACTAAATACAAGATCGTAGTCCAGGAGAATGGCCATGTGTACAGTGACAAGTTGGCTTCTGACCATATTATGGATGGTAATGGCGGGGGCAAGCTCGTGCCAAATCATGATCTCTTAGGATGGACTGATGATCGAGAAGAACCAGCATCTATAAAAAAAAGTCAGAAAAGAAGCTCACGTAATGGCAACGTTGACCAAGAGAGTCAAAGGGGACAGGAATATATGATGAGCAAGACTTGGAAGACATCTGGGAAGAGAAATCATGGTACTGATAAAAATGATAGAAGAGGACTAAGTGTGGTCCCTCAAGCCAAAAGGCAAACTGTGTTAGGAGTGCCATGTGTTGTCGGTCCTCTTTCTGACTGTGGCAATAAAAATGCAGATCAAAACCATGGCAGGGATAAAGAGAAGCATCAGAGAGAATCAGATGTTGGGCAACAGGTTGGCCTTTCTGGGATTCAAGATCCTAACCTTACACCGAATGATCATATGTTTGTTGGTGAGCCTTCCTGTAGCAACAAAAATGCACAACTTACTCCAGCATCTGAGTCATTAGATAAGATGAATACCCCAGCTGCAGATGATTTAAACCTTGTCAGGATGCGTTCTCTGTATCCTGAAATTCCTATTTTTAGTGGTAATGAAACTCTTAATCGTAGTGTGCCGCCAGGTTTTGCAGCTGGTCTTAATTATGCATTTTCAATCAGCCATTCAGCAGGGTGGCTCGATGAATAG | 2763 | 0.3952 | MKRRFASLDDETESETDFQSLLVSNYHLEDDDDEPVSFSVLPIQWSDSEISKVNDVNKGHVFLHGSADNGLQKIFMQVTAWRFDISGLKPVVSLLSKDKRWIKLQKPRKSFMDTVKNVLITLYFLHCVKKKPRLSSTSFWSSLCRDRDLSSYGFKPSQKDLLDHMTLIGEATKRDAVLARSKLLLTVLGDKPEDQRPSDEEFEDLAQPGIIVKYIDNDIIDEANEDSEVDENLFDNVCAFCDNGGNLLCCDGACMRSFHATKQDGKDSFCVSLGLTPKEVDEIQNFYCKNCENRQHQCFACGKLGSSDKDNGAEVFKCSSETCDRFYHPHCVAKLLPKVVKHVAEDLEKNIADGKPFTCPVHFCCVCKGLENKAEPELQFAICNRCPKSYHRKCLPRGIAFDDINGFKLRAWEGLLPNNRILIYCLNHEINDKLGTPVRDHIKFPNTRATVREINTSNKRIKHATKEGDTLKNNVSFVKSSGKGSAKGSKVTGELPSSKIDSKKSSEKINSGSDISRTPISKEIPSSRLTENKNSVSKNSSDKMISGSHISKKTKSNEISRRPLTENKKSISKKFEMPNCEENNHLTGEKLCAPMDKDSEQIKNDDQVDNNNTLFVKPIRSLFPPPDADSEKGLVDSFKEARSSLLLEGKIEKHKMGDVEDKTITMGKREDSGDLTTKYKIVVQENGHVYSDKLASDHIMDGNGGGKLVPNHDLLGWTDDREEPASIKKSQKRSSRNGNVDQESQRGQEYMMSKTWKTSGKRNHGTDKNDRRGLSVVPQAKRQTVLGVPCVVGPLSDCGNKNADQNHGRDKEKHQRESDVGQQVGLSGIQDPNLTPNDHMFVGEPSCSNKNAQLTPASESLDKMNTPAADDLNLVRMRSLYPEIPIFSGNETLNRSVPPGFAAGLNYAFSISHSAGWLDE | 920 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 472 | 499 | - | - | |
| Car02g02085 | 920 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 22 | 136 | IPR022702 | - | |
| Car02g02085 | 920 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 383 | IPR013083 | - | |
| Car02g02085 | 920 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 673 | 834 | - | - | |
| Car02g02085 | 920 | SMART | PHD_3 | 364 | 429 | IPR001965 | - | |
| Car02g02085 | 920 | SMART | PHD_3 | 237 | 292 | IPR001965 | - | |
| Car02g02085 | 920 | SMART | PHD_3 | 297 | 363 | IPR001965 | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 803 | 819 | - | - | |
| Car02g02085 | 920 | SUPERFAMILY | FYVE/PHD zinc finger | 224 | 295 | IPR011011 | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 714 | 736 | - | - | |
| Car02g02085 | 920 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 6 | 540 | - | - | |
| Car02g02085 | 920 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB_G0268158 | 543 | 672 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 737 | 759 | - | - | |
| Car02g02085 | 920 | PANTHER | ENHANCED DOWNY MILDEW PROTEIN | 6 | 540 | - | - | |
| Car02g02085 | 920 | PANTHER | ENHANCED DOWNY MILDEW PROTEIN | 543 | 672 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 820 | 834 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 511 | 553 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 760 | 775 | - | - | |
| Car02g02085 | 920 | CDD | PHD_SF | 363 | 395 | - | - | |
| Car02g02085 | 920 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 294 | IPR013083 | - | |
| Car02g02085 | 920 | PANTHER | ENHANCED DOWNY MILDEW PROTEIN | 673 | 834 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 472 | 582 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 554 | 580 | - | - | |
| Car02g02085 | 920 | MobiDBLite | consensus disorder prediction | 705 | 841 | - | - | |
| Car02g02085 | 920 | CDD | PHD2_NSD | 297 | 362 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car02g02085 | Car-Chr2 | 51226700 | 51232493 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car02g02085 | 230 | 332 | PHD Transcription Factor Family | AT3G14980 | 31.068 | 4.22e-06 | 48.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car02g02085 | - | - | cam:101491311 | 1788.85 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Car02g02085 | 02 | 51226700 | 51232493 | Car02g02085 | 02 | 51226700 | 51232493 | ECH | |
| Car05g01065 | 05 | 52174697 | 52187471 | Car02g02085 | 02 | 51226700 | 51232493 | PCT |