Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02080 ATGGCACATAGAATATTGTTTCTATTTTTCTCCCTACTATTCATCTCAACAAGTGTTTGTATTGAAGAGGGTTTCATCTCTGTAGTTATATCTGAAAAGGGTCTTGACTTTGTCAAAGATATTCTAATAGACCAAGCTATATCATCTATAGTTCTTTCTCAGCTTCCACAAATTGAGAAATCTGTTCAAGTACCTCTTGTTGGAAAAGCTCGTGTGATTCTTTCTGAGATCACAATCAAAGATATCCAAGTCAGTTCTTCATCTGTTGAAACTGGAGATACAAGCATTGTTGTTGTTGTTTCAGGTGCCACTGCTAATTTGAGCTTGAATTGGAGGTATACTGTTAGCAGTTGGTTAGTCCCAATTGGAATTTCAGATAGTGGAACTGCCACTGTCAAGGTTGAGAATATGCAAGTATGGCTTACTGTAAATTTAAGGAACCAAGGAGGAACTCTTAAGCTGATTCTCTTAGACTATGGATGTGATGTTGGAGACTTATCCATAAAAATGAATGGTGGAGCAGCTTGGCTTTATCAAGTGCTTGTTGATGCTTTTAAAGGAAACATAGCATCTGCAGTTGAAGATTCTATCTCTGATAAAATAATAAAAGGGATAGCAACACTTGACGATTTTCTGCATTCTCTTCCGAAGACAATTTCATTAGACGAAACTGCTGCTCTAAATGTTTCTTTTGTGGACAATCCTGTGCTGAGTAATTATTCTATCCAACTTGAAATCAATGGTTTATTCACTGAGAAAAACGATGTTTTAGTACCTCAACATTACCGCCTAGGATCTGACATTTCTATTTCAAGTGGTGATTTACCAAAGATGATAAAGATTTCAATACATGAAAATGTTTTCAAATCGGCCTCCGAAGTTTACTTCGCAGCAGATACTTTGCAATGGATACTTGATGAACTACCTGATCAGGCTCTTCTGAACACTGCGGAATGGAAACTCATCATTCCTCAATTATACAAGCAATATCCAAATGATGACATGAATCTTAATTTTTCTGCATCATCTCCACCAATTATACAAGTGTCGAATCAAGATATTGCCGCTAAGTTTTCAGTAGATATAATAATTGATGTTCTAGAAGCTGGTGAAGTCATACCTGTTGCATGCATATCTGTGGATATTAGTGCTTCATGCGACGCAGAAATCGTAAGAAACAGTCTTACGGGTCGCCTTAAATTGTTGAAGTTTTCCACATACTTGAAATGGAGCAAAATAGGGAAACTTCACATGAATGTAATTCAGTCCCTGACATCAACCGTCCTCAAAACCGTCCTCATACCGTACATGAACTCGCAGTTAAAGAAGGGAATTCCGTTGCCAATTCTTAATGGTTTTGCGCTTGCGAATGCGCGTAGAGCTATAGATTGTGGTGGAAATTGGATTGCAAATACTATCATTGTTGACCAACATAAAAAAGGATCGTTCGTAACAATACAAGCTGCTATTGATTCTATAAACAACCAAAATAAAAATTGGGTTATGATTAATATCAGTCCTGGCATATACAACGAAAAAGTTCACATACCCTTTGAAAAGCCATGCATTATTTTAAAAGGATGGGGTAGGAATGCCACAACCATTACTTACAATGATTCATTTCAAAATATGGGTACATCTTTGAGCGCTTCATTCATTTCATCTCCACCTAATGTTGTTGTGAGTGGTATTACATTCAAGAACACATATGGATCTAATGGACCCGCAGTTGCAGTTAATATATATGGCGATAAATCTGCTCTATATGAATGTAGTTTCATTGGTTATCAAGATACATTGCTTATAACAAGCGGACGCTCTTATTTCAAAAATTGTTTTATTCAAGGAGAAGTAGATTTTATTTGTGGTGAAGGCCAAAGTTATTTTGAGAATTGTGTGATAAATGCTGTACAAGAGAAAGGAAAGCCCATTGGTTTTGTGACAGCACAACATAGAAACTCACCAAAAGATTCTAACGGTTTTGTTTTTAGAGGAGGGTCTGTTGTTGGGACTGGTAATGTGAATCTTGGAAGACCTTGGGGCCCTTATGCAAGAGTTATATTTTGGGAAACTTATTTTTCATCAGTAGTAACTCCCCAAGGATGGGATATTTGGAATTTAAAACCCACGCAAGAGTAA 2139 0.3675 MAHRILFLFFSLLFISTSVCIEEGFISVVISEKGLDFVKDILIDQAISSIVLSQLPQIEKSVQVPLVGKARVILSEITIKDIQVSSSSVETGDTSIVVVVSGATANLSLNWRYTVSSWLVPIGISDSGTATVKVENMQVWLTVNLRNQGGTLKLILLDYGCDVGDLSIKMNGGAAWLYQVLVDAFKGNIASAVEDSISDKIIKGIATLDDFLHSLPKTISLDETAALNVSFVDNPVLSNYSIQLEINGLFTEKNDVLVPQHYRLGSDISISSGDLPKMIKISIHENVFKSASEVYFAADTLQWILDELPDQALLNTAEWKLIIPQLYKQYPNDDMNLNFSASSPPIIQVSNQDIAAKFSVDIIIDVLEAGEVIPVACISVDISASCDAEIVRNSLTGRLKLLKFSTYLKWSKIGKLHMNVIQSLTSTVLKTVLIPYMNSQLKKGIPLPILNGFALANARRAIDCGGNWIANTIIVDQHKKGSFVTIQAAIDSINNQNKNWVMINISPGIYNEKVHIPFEKPCIILKGWGRNATTITYNDSFQNMGTSLSASFISSPPNVVVSGITFKNTYGSNGPAVAVNIYGDKSALYECSFIGYQDTLLITSGRSYFKNCFIQGEVDFICGEGQSYFENCVINAVQEKGKPIGFVTAQHRNSPKDSNGFVFRGGSVVGTGNVNLGRPWGPYARVIFWETYFSSVVTPQGWDIWNLKPTQE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02080 712 SMART bpi2_2 273 488 IPR001124 GO:0008289
Car02g02080 712 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 241 458 IPR017943 GO:0008289
Car02g02080 712 Pfam LBP / BPI / CETP family, N-terminal domain 34 209 IPR017942 GO:0008289
Car02g02080 712 Pfam LBP / BPI / CETP family, C-terminal domain 276 457 IPR001124 GO:0008289
Car02g02080 712 Gene3D - 33 213 - -
Car02g02080 712 Gene3D - 467 712 IPR012334 -
Car02g02080 712 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 28 239 IPR017943 GO:0008289
Car02g02080 712 SMART bpi1_3 30 255 IPR017942 GO:0008289
Car02g02080 712 SUPERFAMILY Pectin lyase-like 468 708 IPR011050 -
Car02g02080 712 PANTHER OS06G0309200 PROTEIN 1 459 IPR045897 -
Car02g02080 712 Pfam Pectinesterase 473 706 IPR000070 GO:0030599|GO:0042545
Car02g02080 712 Gene3D - 27 458 - -
Car02g02080 712 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02080 Car-Chr2 51201163 51208249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02080 454 708 Carbohydrate Esterase AT2G19150 43.939 2.73e-61 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02080 K05399 - gmx:100804747 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02080 02 51201163 51208249 Car02g02080 02 51201163 51208249 ECH
Car05g01056 05 52063277 52069682 Car02g02080 02 51201163 51208249 PCT