Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02079 ATGGACGAGTTACCAGAACCGACGACGGATCCTCCACCGGAGGAGCTTCAGAACGGAGGAGGAGACGAACGGTGCACCAAGAAGGCCAAGGTTGAGCAAATTGATGATGATTCGGAGGGGGATTTGAAGCGAGTGGCGGAGATTGTTTTGGTTTTATCGACGATGGCGGCGGTGCGAGGTGGAAAGAAGCCAACTGATGTGGAGGTTGAGCTAATGAAGGAGGCTCGGACTAAGCTTGCTGTCTTATGTCAGGGGATTGCTCCTAAGGATATTGTTTCCGGTGAAGCTATTGACACCGTTATTGAAGATCTAGGTTTGAATGCTAAGGTTGGGGACCAGAGGTTAGGGTTTCGAAATCCTAAGACGTCCATCGCTGAGAGGTATTCGTATGCTAAATCCAAGATGGAGGAATCAAAGAAGTTCTCTGCACCTTCTACAACATATACATCTCAGCCCTTGCAAACAAATGCTAGTGGAATGGTTGACAATCGTGTGCCAACAAATGCTGTTCGAATGTTTGCACCTGACAAACCAAACCATACGGCAATAGCTTCTGCAGTTTCCATGGTGTCTATTCCTCCCCATATTTCTGCAGGATCTTCTGCAGCAATGCAATATCCAACAGCCAGCAATGAAGTGAGACCGCCCATGGTTTCTGGTGTAATGCCTAGCAGTCACGTGGGGAGAAATGCATCTTCTGTAGCACTGCCTAGAGTTGAAAACCCACAGTTCAAAGTTACTGGAGGATTGAGTGGAGCTCCTTATGTTCTTCAAGTCCAAGCCAATTCATCTGCTAACCAACCATTGGTGAATGTTCCTACGTGGTCAATTCAGACTCAACCTGCATCATTAGCTAGAAGCATATCAGAAAACAAGGTGCCGGCTCATAACACTGTCAAGGTTGAAGGAACTGCTGATGTAACCACATCAAGGGCAGGTCCACAAGTAACAACTGATAAGAGCATTAGACCATTTATTACTCAAACAGCACCTGGAAATATGTCTAGTACGCACCATCCATTGCAGGCTGTGAACATGTCTCAACCTCCTATGATTCCCAGTCACACTGAAATTGCAAAAATTGTCCAGAAACTGTTTCTACCAAAGTTTCCTGACCAGCCCACATGGACTCCTCCATCAAGAGATTATATGAATAAGGCTTTCACTTGTCAGACATGTGAGCTCACTGTCAGTGATGTTGATTCCGTTCTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCATCAGTCATTAGAGGAATTCATAATAGGGTTGATTGGCACTGCATGAGGTGCTTGAATTTAAGCGGTGGAAAGCCCTTGCCTCCAAAATATGGTCGTGTGATGAGATCCTCAAACACATCACCAAATTTTCCCTCTAATGTAGCTGGTATTCAACCTTCTTCTGAGAAGAAAGCAGAGAGCTCAGATCCAAAGGTCAGCCCACATATGTTTACTACAATTGGAAACTCTGTTCCAACAGTTTCCAGTGCCAATCACAATGATGAGCCGTCATTTGACTCAAATACCCCAGAAATGAGAGATATACAAGGTTCAAACATTTCACCCAGCATCGAAACCATTGATGAGAAGCCTGATCCAAACATCAGTATGAAATCTGCAACTTGTAGTGCTTCCACCTGTTTGCCAGGTGAAAATCAGGCTGAACAAATAGATTCAAAGGCTTTGACCTGTAAAGATACTTCAGAATCCGAAACTCCTAAAATTTGCGAGCCGATTAAATGTGAAAATTTGCAATCATCACTAAATTCTCAAGTTGGGATGACAGCGGCACAGGACACTGCTGAAATATCAACAGATAGACACGTTATGATTAGTAAACAAAAGGAGTCTCATGGAGGAGAAAACATAACTTATGATATCAAGCGCAATGACCCAGATGTTGCACAACCAAATTCTGTCGGAGGTTCTGGAACTAATACTGAAGGTATTCAGCACTCTGCTTTATCTTCAGATAGCTCACATGTTGTAGAATGGATTGGTGATGTTGTACAACTTGTAGATGAGAAAAAGTATTATCAATCTTGCTGCATTGATGGAGTAACATATAGGCTGCAGGGTCATGCTTTTTTCACGTCCAACCATGGGAAATTAACGCCTTCTAAACTCCAGTCTATGTGGGAAGATTCTAAAACTGGGATAAAGTGGGTTAAGGTGACGAAGTGCTACTTTCCTGATGATTTGCCTGGGAATATCGGGCATCCTTGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAATCGAAATGGCTAGCTCTATCCGAGGCCCTTGTGTAGTCCTTCCATACGATAAATTTAAACAGGAAAATGACAGAAGATGTCAATTTGGAATTGATGCAAGTGCTAGTGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTCATTTCAACCTGTTATCAGTTGA 2466 0.4315 MDELPEPTTDPPPEELQNGGGDERCTKKAKVEQIDDDSEGDLKRVAEIVLVLSTMAAVRGGKKPTDVEVELMKEARTKLAVLCQGIAPKDIVSGEAIDTVIEDLGLNAKVGDQRLGFRNPKTSIAERYSYAKSKMEESKKFSAPSTTYTSQPLQTNASGMVDNRVPTNAVRMFAPDKPNHTAIASAVSMVSIPPHISAGSSAAMQYPTASNEVRPPMVSGVMPSSHVGRNASSVALPRVENPQFKVTGGLSGAPYVLQVQANSSANQPLVNVPTWSIQTQPASLARSISENKVPAHNTVKVEGTADVTTSRAGPQVTTDKSIRPFITQTAPGNMSSTHHPLQAVNMSQPPMIPSHTEIAKIVQKLFLPKFPDQPTWTPPSRDYMNKAFTCQTCELTVSDVDSVLLCDACEKGFHLKCLQPSVIRGIHNRVDWHCMRCLNLSGGKPLPPKYGRVMRSSNTSPNFPSNVAGIQPSSEKKAESSDPKVSPHMFTTIGNSVPTVSSANHNDEPSFDSNTPEMRDIQGSNISPSIETIDEKPDPNISMKSATCSASTCLPGENQAEQIDSKALTCKDTSESETPKICEPIKCENLQSSLNSQVGMTAAQDTAEISTDRHVMISKQKESHGGENITYDIKRNDPDVAQPNSVGGSGTNTEGIQHSALSSDSSHVVEWIGDVVQLVDEKKYYQSCCIDGVTYRLQGHAFFTSNHGKLTPSKLQSMWEDSKTGIKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRIEMASSIRGPCVVLPYDKFKQENDRRCQFGIDASASVQPIFLCRWFYDEIKKSFQPVIS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02079 821 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 820 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 642 660 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 1 37 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 455 524 - -
Car02g02079 821 CDD BAH 692 819 - -
Car02g02079 821 Gene3D - 672 820 IPR043151 -
Car02g02079 821 SUPERFAMILY FYVE/PHD zinc finger 380 446 IPR011011 -
Car02g02079 821 CDD PHD_SF 389 437 - -
Car02g02079 821 ProSiteProfiles Zinc finger PHD-type profile. 387 440 IPR019787 -
Car02g02079 821 SMART PHD_3 389 438 IPR001965 -
Car02g02079 821 Pfam PHD-finger 390 438 IPR019787 -
Car02g02079 821 MobiDBLite consensus disorder prediction 485 524 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 20 37 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 455 476 - -
Car02g02079 821 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 18 820 - -
Car02g02079 821 MobiDBLite consensus disorder prediction 622 660 - -
Car02g02079 821 ProSitePatterns Zinc finger PHD-type signature. 390 437 IPR019786 -
Car02g02079 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 438 IPR013083 -
Car02g02079 821 ProSiteProfiles BAH domain profile. 693 820 IPR001025 GO:0003682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car02g02079 PHD 3.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02079 - - gmx:100807139 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02079 02 51193361 51199651 Car02g02079 02 51193361 51199651 ECH