Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02042 ATGCCCTCAGCTCAAGATCCATTTTACGTTGTCAAAGAAGAGATTCAAGATTCTATTGATAGGTTGCAATCTAATTTTCACCAATGGGAAAACACATCTGATACTGGGGAGCATTTGCACCTTTCAAAGGAAGTTATTGCTGCTTGTGGAAGTATTGAGTGGCAGGTAGATGAATTGGACAAAGCAATTTCTGTTGCATCTAGAGATCCTTCTTGGTATGGCATTGATGATGTGGAGATTGAAAACCGGAGGAGGTGGACCAGCAATGCTCGTACCCAGGTGCGCACAGTTAAGAAAACGGTGGAATCTGGAAAGGGCTCCAATACAACAAGTCATGCAAGTATAAATGGGATGCACAAGGAATTAATGAGGCTTCCTGATTCTCATCAAAGTACATCCAACAAATACACCGCTGGGGATAATGATGATTTTATAGAATCAGAATCAGATAGGCAGATGCTTCTTATAAAGAGGCAGGACGAGGAGTTGGATGAGCTTAGTTTAAGTGTACAAAGAATTGGAGGTGTTGGACTTACAATACATGAAGAACTCCTTGGGCAGGAAAAGATTTTAGATGAACTTGGCAACGAGATGGACAGTACATCCAATCGTCTAGATTTCGTTCAAAAAAGAGTGGCAATGGTGATGAAGAAGGCAAGTGTGAAGGGCCAGATCATGATGATATTGGCCTTCCTATCTCTCTGCAGACTTCAGGAAACGTGTAACTTAATCACAAAACAAGTGTACATGGTCGATATTCAGATCCCGACCACGTTTGATCCATTTTCGGAGGCTAAAGAATCGGATGCGCCGGGTGCGAAAGAGTATGTCCATATTCGGATACAACAAAGAAATGGAAAGAAGAGCCTAACAACAGTGCAAGGGCTGAAGAAAGAATTCAGCTATGAGAAGATTCTTAAAGACCTCAAAAAAGAGTTTTGTTGCAATGGAAATGTTGTGAATTGCAAGGAGCTTGGTAAGATTATACAGCTCCAAGGTGATCAACGCAAAAATGTTACACACTTTCTTGTTCATGCTGGTCTTGTCAGAAAGGACAACATCAAGATTCATGGTTTCTGA 1080 0.413 MPSAQDPFYVVKEEIQDSIDRLQSNFHQWENTSDTGEHLHLSKEVIAACGSIEWQVDELDKAISVASRDPSWYGIDDVEIENRRRWTSNARTQVRTVKKTVESGKGSNTTSHASINGMHKELMRLPDSHQSTSNKYTAGDNDDFIESESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELLGQEKILDELGNEMDSTSNRLDFVQKRVAMVMKKASVKGQIMMILAFLSLCRLQETCNLITKQVYMVDIQIPTTFDPFSEAKESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVNCKELGKIIQLQGDQRKNVTHFLVHAGLVRKDNIKIHGF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02042 359 Gene3D - 241 359 - -
Car02g02042 359 PANTHER SYNTAXIN 1 235 IPR045242 -
Car02g02042 359 Gene3D - 2 104 - -
Car02g02042 359 CDD SNARE_Qc 156 213 - -
Car02g02042 359 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Car02g02042 359 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Car02g02042 359 SUPERFAMILY SNARE fusion complex 151 215 - -
Car02g02042 359 SMART tSNARE_6 148 215 IPR000727 -
Car02g02042 359 Coils Coil 191 211 - -
Car02g02042 359 Coils Coil 12 32 - -
Car02g02042 359 Pfam Translation initiation factor SUI1 274 347 IPR001950 GO:0003743|GO:0006413
Car02g02042 359 CDD eIF1_SUI1 275 358 IPR005874 GO:0003743
Car02g02042 359 ProSiteProfiles Translation initiation factor SUI1 family profile. 277 347 IPR001950 GO:0003743|GO:0006413
Car02g02042 359 SUPERFAMILY eIF1-like 239 359 IPR036877 GO:0003743|GO:0006413
Car02g02042 359 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 153 215 IPR000727 -
Car02g02042 359 Gene3D - 160 224 - -
Car02g02042 359 PANTHER SYNTAXIN PROTEIN 1 235 - -
Car02g02042 359 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 252 359 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02042 Car-Chr2 50885667 50892233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02042 55 234 SNARE and Associated Proteins AT1G28490 65.746 2.74e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02042 K08500 - gmx:100793612 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02042 02 50885667 50892233 Car02g02042 02 50885667 50892233 ECH