Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02041 ATGGGTGGTTGTTTGAGTAAAAAAGGGTCAGAGGTAGAACACATTGGTCATTCACATGTTGGTGTTTCTGCTATGcaaaatcaaaatcaaaatcaaaatcaaaatcaaaatcacaatcacaatcaaaatcagaatcaaaatcagaatcaaaatcacaatcacaatcagaatcaaaatcacaatcaCCATGAACCCTTTGTGAATCAATCAAAAGCCCCTTCAAATCAACCACACCAATTACCTGAAAAACAAGTCAAAAAACCAATTGTTCAAAGGCCATCAGATTCAAACACAATTCTTGGCAAGAATTTTGAAGATGTGAAGCAAATTTACACACTTGGTAAAGAATTAGGGAGAGGACAATTTGGTGTGACTTATCTTTGCACTGAGAATTCAACTGGTTTGAAATATGCTTGCAAATCAATTTCAAAGAGGAAACTTGTTAGTAAAGCTGATAAAGAAGATATAAAGAGAGAGAATCAAATCATGCAACATATGAGTGGACAACCAAACATTGTTGAGTTTAAAGGTTCTTATGAGGATAAGAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGAATTATTGCTAAAGGACATTATAGTGAAAGAGCTGCAGCTTCTATATGTAGACAGATTGTTAATGTTGTTCATATTTGTCATTTTATGGGTGTCATGCATAGAGATCTTAAGCCTGAAAATTTCTTGTTGTCTAGTAAGGATGATAAGGCAACTATTAAAGCCACTGATTTCGGCTTGTCGGTTTTCATCGAAGAAGGAAAGGTATACCGAGACATAGTTGGTAGTGCTTATTACGTTGCGCCAGAAGTTCTACGTCGTAGATATGGGAAAGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTTGTGGTGTGCCTCCATTTTGGGCAGAGACGGAAAAGGGAATATTCGATGCCATATTGCTAGGTGATATTGATTTTGACAGTCATCCTTGGCCAAGCATATCGCATGGTGCGAAGGACCTTGTTCGTAAGATGCTTATACAAGATCCAAAGAAACGCATCACTGCTGCTCAGGTTCTAGAGCATCCATGGCTTAAAGAAGGTGGAAATGCTTCTGACAAACCAATAGACAGTGCAGTCCTTTCGAGAATGAAGCAATTCCGAGCAATGAATAAACTAAAAAAACTCGCCCTCAAGGTCATTGCTGAAAACCTTTCTTCAGAAGAGATTCAAGGTTTGAAGGCAATGTTTACAAACATGGACACTGACAAAAGTGGTACAATCACATATGAGGAATTGAGGGCGGGATTGCAAAGACTCGGCTCGAAGCTTACCGAAGCTGAAGTGCAGCAGCTTATGGATGCTGCTGATGTAGATGGAAATGGAACAATTGATTACATAGAATTCATCACTGCTACAATGCATAGACACAGGTTAGAAAGAGATGACCATCTTTACAAGGCCTTCCAATATTTTGATAGAGACAACAGTGGTTTTATTACAAGAGATGAACTGGAAACAGCCATGAAGGAATATGGTATGGGCGACGAAGACACAATCCGGGAAATTATATCCGACGTTGATAAAGACAATGATGGTAGAATTAACTATGAAGAATTTTGTGCAATGATGAGGAGTGGAGTCCAACAACAAGGCAAGCTATTCTAA 1680 0.3613 MGGCLSKKGSEVEHIGHSHVGVSAMQNQNQNQNQNQNHNHNQNQNQNQNQNHNHNQNQNHNHHEPFVNQSKAPSNQPHQLPEKQVKKPIVQRPSDSNTILGKNFEDVKQIYTLGKELGRGQFGVTYLCTENSTGLKYACKSISKRKLVSKADKEDIKRENQIMQHMSGQPNIVEFKGSYEDKNSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDDKATIKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLCGVPPFWAETEKGIFDAILLGDIDFDSHPWPSISHGAKDLVRKMLIQDPKKRITAAQVLEHPWLKEGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSSEEIQGLKAMFTNMDTDKSGTITYEELRAGLQRLGSKLTEAEVQQLMDAADVDGNGTIDYIEFITATMHRHRLERDDHLYKAFQYFDRDNSGFITRDELETAMKEYGMGDEDTIREIISDVDKDNDGRINYEEFCAMMRSGVQQQGKLF 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02041 559 MobiDBLite consensus disorder prediction 31 81 - -
Car02g02041 559 Pfam Protein kinase domain 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02041 559 Coils Coil 434 454 - -
Car02g02041 559 ProSiteProfiles EF-hand calcium-binding domain profile. 520 554 IPR002048 GO:0005509
Car02g02041 559 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 553 - -
Car02g02041 559 Gene3D Phosphorylase Kinase; domain 1 113 196 - -
Car02g02041 559 MobiDBLite consensus disorder prediction 31 99 - -
Car02g02041 559 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Car02g02041 559 SMART serkin_6 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02041 559 SUPERFAMILY Protein kinase-like (PK-like) 111 376 IPR011009 -
Car02g02041 559 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Car02g02041 559 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Car02g02041 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Car02g02041 559 Gene3D - 377 552 - -
Car02g02041 559 ProSitePatterns EF-hand calcium-binding domain. 532 544 IPR018247 -
Car02g02041 559 Gene3D Transferase(Phosphotransferase) domain 1 197 376 - -
Car02g02041 559 ProSiteProfiles Protein kinase domain profile. 111 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02041 559 CDD STKc_CAMK 111 368 - -
Car02g02041 559 ProSitePatterns EF-hand calcium-binding domain. 461 473 IPR018247 -
Car02g02041 559 SUPERFAMILY EF-hand 408 548 IPR011992 -
Car02g02041 559 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 55 553 - -
Car02g02041 559 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Car02g02041 559 SMART efh_1 523 551 IPR002048 GO:0005509
Car02g02041 559 SMART efh_1 488 516 IPR002048 GO:0005509
Car02g02041 559 SMART efh_1 452 480 IPR002048 GO:0005509
Car02g02041 559 SMART efh_1 416 444 IPR002048 GO:0005509
Car02g02041 559 Pfam EF-hand domain pair 487 549 IPR002048 GO:0005509
Car02g02041 559 Pfam EF-hand domain pair 417 477 IPR002048 GO:0005509
Car02g02041 559 CDD EFh 491 549 IPR002048 GO:0005509
Car02g02041 559 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Car02g02041 559 ProSiteProfiles EF-hand calcium-binding domain profile. 484 519 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02041 Car-Chr2 50880587 50885257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02041 94 559 EF-hand Containing Proteins AT3G20410 82.906 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car02g02041 Pkinase 3.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02041 K13412 - gmx:100794852 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02041 02 50880587 50885257 Car05g00983 05 50527115 50532410 ECH
Car02g02041 02 50880587 50885257 Car02g02041 02 50880587 50885257 ECH