Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02040 ATGGCTATTACCATCCCTTCTTCAACTAAGTGGTTTTCTGAAACATTAGAAGCAGTGACAAAGTTCAAAGAAATTCTTTCTTTGAGAGTGTGGAAAGTCATTGATTGTTCTGCAGTTGAGAAATTTGTGAATGTTATGAAGAGAGTTCTTTTTGCTGCATTCACCTTCATTTTAGCACTAGGAGGATCGATGATAGGAACAATAGCAGGAGCTATTAAAGGACAAACAACAGAAGCTGGTTTTCTTGATGGAGCTGGAAAAGGAGCAATTGCAGGGGCCATTGCAGCCATTGAATTGATGAGTTTTGCTTCTCTTTGTGAGCCATTTTCTAAGGTTGCTCTGTTGAGAAGTTTATTAAATGGCAAATTGTTTGTGGAATGGATATGTCCAACTGTTGCACAAGCTTATTTGTTTTATATTAATTCGTTAGAATCAACATTTGGAGAAATGTTTTCAGACATTCATGATAGTATGGGAGTTAAGGGGATGCCACAAAGTTGTATTATGAAACTTCCATTTCACAAATTTAACTCCAATAAAATGATGAAACTATACAGGGAGTCTTGTTGCTCAATTTGCTTCCAGGATTTTGAAGATGGAGAGTTGGTGAGAATTCTTCCAAAATGTTGTCACATTTTTCATTTAGAATGCATTGACAAGTGGCTTATCCAACAAGGATCATGTCCCATGTGTAGAGCTAGAACTTACGTTCCTAACCACAATCTTAATGAATAG 735 0.3646 MAITIPSSTKWFSETLEAVTKFKEILSLRVWKVIDCSAVEKFVNVMKRVLFAAFTFILALGGSMIGTIAGAIKGQTTEAGFLDGAGKGAIAGAIAAIELMSFASLCEPFSKVALLRSLLNGKLFVEWICPTVAQAYLFYINSLESTFGEMFSDIHDSMGVKGMPQSCIMKLPFHKFNSNKMMKLYRESCCSICFQDFEDGELVRILPKCCHIFHLECIDKWLIQQGSCPMCRARTYVPNHNLNE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02040 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 236 IPR013083 -
Car02g02040 244 SUPERFAMILY RING/U-box 183 238 - -
Car02g02040 244 CDD RING-H2_PA-TM-RING 189 232 - -
Car02g02040 244 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Car02g02040 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 234 - -
Car02g02040 244 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 18 234 IPR044523 -
Car02g02040 244 SMART ring_2 190 231 IPR001841 -
Car02g02040 244 Pfam Ring finger domain 190 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02040 Car-Chr2 50858201 50860866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02040 43 232 C3H Transcription Factor Family AT5G66070 37.500 2.25e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02040 - K19041 gmx:100305612 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02040 02 50858201 50860866 Car02g02040 02 50858201 50860866 ECH