Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02034 ATGAAAAGACCAAAATCAAAGGAGTTTCGGAAGCAACAACGACTCTCAGAAGAAGATGAAATTAAGCTATTGAATTCATGGATTCAATGCCAGAAACCAGAGTCAGGTTCGAACCCAATGTCACTGACACCTCTTCCCAAAAACTCACCCGTTGGCCGCCTCGACGACGATACCTTCTCTCGCTACGCCGGAGTGGTGCGGTTTGAGCAGTTGCCACTATCAAGGAAAACTAAAGACGCTTTGCGAAGTAATAAGTTTGTTTCCATGACTGATATTCAAAGAGCTTCTCTTCCTCATGCACTTTGTGGCCGTGATGTTCTTGGTGCCGCCAAAACTGGTTCTGGCAAAACACTTGCTTTCATTATCCCTGTGTTGGAGAAATTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTCGGAAGCATAATCATATCACCTACAAGAGAATTAGCTGGTCAATTATTTGATGTGTTGAAATCTATTGGGAAGTACCATGGTTTTAGTGCTGGCCTCCTCATCGGTGGTCGTAAGGATGTTGTTACTGAGAAAGAACGTGTTAACGAGCTCAATGTATTGATCTGCACACCCGGACGCCTTCTACAGCACATGGATGAAACTCCTAATTTTGATTGTTCACAGATGCAGGTTTTGGTACTAGATGAGGCTGATCGTATTCTTGACAGCGGATTCAAGAAGGAACTAAATGCAATCATCTCACAGTTACCAAAGCGTAGACAAACCATGCTTTTCTCGGCAACTCAAACAAAGTCAGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCAGAGTATCTGAGTGTGCACGAAGAGTCTGTGTCTGCCACTCCTACTCTCCTGAAGCAAATTGTGATGATTGTTCCCCTTGATCAAAAGTTAGATATGCTGTGGAGTTTCATAAAGACCCATCTACAGTCAAAAACTCTTGTCTTCCTATCAAGCTGTAAACAGGTAAAATTTGTCTTTGAGGCATTTAAGAAACTTCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGAATGAAACAGGAAAGGAGAATGGCAATATATGCTGACTTCTGTGAGACGCGCTCAGTTCTCTTCTCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTAGATTGTCCTGAGAATGTAGCATCTTACATACATAGAGTTGGCCGTACTGCTCGTTATAAATCTGATGGAAAGTCAGTTTTATTTCTATTGCCTTCAGAAACTAAAATGCTTGAAAAGTTAGAAGCAGCAAAGGTTCCAGTGCATTTAAACAAGCCAAGGAAAGAGCTACTGCAACCAGTGTCCAGTTTGTTGGCATCTTTACTGGTCAAGTACCCAGAACTTCAGATGAAGGCCCAAAAGGCATTTATCATATACTTGAAATCTATCAATATCCAAAAGGATAAAGAGATCTTTGATGTTTTGAAACTTCCTGTTAATGAGTATTCAGCATCATTAGGTCTACCAATGACCCCCAAAATCCGTTTTCTAAACCAAAAAATTAAAGCTAAAGATCTGTCAACAAAATCAATTTTCGATGAACCAGAGGAGGATTTAAACAAGAAAAATGTCTTGGAAGGTTCAAAAGAAAAGCTAGACACAGTTGTTTTCAACGATGAGGAAATTGAAAATGATCTTCTTCGGCCAGCTGATACCTCAAATGAAGGTGACACAAAGTCAGCTGAATTTGGAGGGTTAATACCAGCAACTCGTGTATTAAAGAAAAAAAAGCTCAAGATTAACATGCATAGACCACTTGGGACTCGGGTTGTATTTGATGAAGAAGGCAAGACACTTCCTCCCCTAGCCAGAATTGCTGACACACAAAGTGGCAAGGAAGCATTGCTAATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGATAAATTTGTAGAGCGTCAGCGACTTAGAGAAAAAAGAATCAAGCAGAAAATGAAATGGAAGGCCGGTAATGCGGAAGAAGAGGACGAGGATGATATCTCTGGGTCTGATGGAGATGAAACGATACATAGACCGCATAAAAAGAGTAAAGTATACTTCGACAGCGACAGTGGCGATGAGGGTGAAAGAAATGAAATCACAGGGAATGCAGGAATTACTTTGGAGGAGCAAGAAGCTTTGGCTTTGAAATTGTTAAATTCCATGCACTCATAG 2232 0.4131 MKRPKSKEFRKQQRLSEEDEIKLLNSWIQCQKPESGSNPMSLTPLPKNSPVGRLDDDTFSRYAGVVRFEQLPLSRKTKDALRSNKFVSMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSIGKYHGFSAGLLIGGRKDVVTEKERVNELNVLICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVSATPTLLKQIVMIVPLDQKLDMLWSFIKTHLQSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYADFCETRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSDGKSVLFLLPSETKMLEKLEAAKVPVHLNKPRKELLQPVSSLLASLLVKYPELQMKAQKAFIIYLKSINIQKDKEIFDVLKLPVNEYSASLGLPMTPKIRFLNQKIKAKDLSTKSIFDEPEEDLNKKNVLEGSKEKLDTVVFNDEEIENDLLRPADTSNEGDTKSAEFGGLIPATRVLKKKKLKINMHRPLGTRVVFDEEGKTLPPLARIADTQSGKEALLIDPEQKAEYYKRMREDLKKADKEDKFVERQRLREKRIKQKMKWKAGNAEEEDEDDISGSDGDETIHRPHKKSKVYFDSDSGDEGERNEITGNAGITLEEQEALALKLLNSMHS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02034 743 Coils Coil 640 660 - -
Car02g02034 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Car02g02034 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 423 IPR027417 -
Car02g02034 743 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Car02g02034 743 MobiDBLite consensus disorder prediction 33 52 - -
Car02g02034 743 CDD DEADc_DDX10 77 275 - -
Car02g02034 743 MobiDBLite consensus disorder prediction 668 726 - -
Car02g02034 743 Gene3D - 283 547 IPR027417 -
Car02g02034 743 SMART helicmild6 325 408 IPR001650 -
Car02g02034 743 Gene3D - 54 278 IPR027417 -
Car02g02034 743 SMART DUF4217_3 447 510 IPR025313 -
Car02g02034 743 SMART ultradead3 85 289 IPR014001 -
Car02g02034 743 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Car02g02034 743 CDD SF2_C_DEAD 286 417 - -
Car02g02034 743 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 544 - -
Car02g02034 743 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Car02g02034 743 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Car02g02034 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 452 IPR001650 -
Car02g02034 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Car02g02034 743 PANTHER RNA HELICASE 57 544 - -
Car02g02034 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 274 IPR027417 -
Car02g02034 743 MobiDBLite consensus disorder prediction 690 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02034 Car-Chr2 50805673 50810882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02034 93 452 Eukaryotic Initiation Factors Gene Family AT1G72730 28.767 3.94e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02034 K14776 - gmx:100792106 1258.82