Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car02g02023 | ATGCAAATTTTTGGACAAAATCCAACCCGCATAATTGAGGGCTATACCGAAGAGTTTGAGACAACTTTTCTTGAGCATATGAAGCGCAGCCATCGTTTCAGCCGTGTGGCTGCAACTGTAGTTTATAATGAATACATAAATGATAGAAACCACGTTCATATGAACTCCACGCAGTGGGCTACACTTACTGAGTTTGTTAAGCACTTGGGTCGAACTGGAAAGTGTAAGGTTGAAGAAACACCCAAGGGATGGTTCATTACTTACATAGATAGAGATTCAGAAACACTTTTCAAGGAGAGGATGAAGAATAAGAGAGTCAAGGCAGATTTGGTAGATGAAGAAAAGCAAGAGAAGGAGATCATGAAACAGATTGAAAGGGCTGAGCAATTGATGCAGCTATCTAATCCCGAGTCTGATCAGCCCTCACAGGTTGAGCCTCCGAGGGAGCTAAATGTAGAAGATGGAGTTAAGATAGGATTTTCTCTTGGGTCATCTGCTAGACCTATGACTAAGGAAAAAGGTGAGGCATCGGTGATGGTCTTTGATGAGGTTGAGGAAGAGAAATATGAGGAAAGGAATCCTAGAAACGATCTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACATTGGAAGAAATGATCAGGGAGGAAGAGAGGAAAAAGGAAAAAATAAACAGGAAGGATTATTGGTTACATGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTGTTGGCAGAGAAAGGGTACTACAAGCAAAAGGGTGTTGTGAGAAAGGTGATTGACAAGTATGTAGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTAAGAGTTGATCAGGAAGAGCTTGAAACTGTGATTCCACAGGTTGGGGGCCGCGTAAAAGTAGTCAATGGGGCATATCGTGGATCACTTGCAAAGCTTCTGGGGGTGGATACAGATCATTTTTGTGCTAAGGTGCAGATAGAAAAAGGACCCTATGATGGCAGGGTACTAAAAGCCGTGGAATATGAGGACATTTGTAAAGCCGCTTAA | 1035 | 0.4213 | MQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTQWATLTEFVKHLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRVKADLVDEEKQEKEIMKQIERAEQLMQLSNPESDQPSQVEPPRELNVEDGVKIGFSLGSSARPMTKEKGEASVMVFDEVEEEKYEERNPRNDLKRKESGGGKSTLEEMIREEERKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKVVNGAYRGSLAKLLGVDTDHFCAKVQIEKGPYDGRVLKAVEYEDICKAA | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car02g02023 | 344 | Pfam | KN17 SH3-like C-terminal domain | 226 | 279 | IPR041330 | - | |
| Car02g02023 | 344 | MobiDBLite | consensus disorder prediction | 189 | 210 | - | - | |
| Car02g02023 | 344 | CDD | KOW_KIN17 | 290 | 342 | IPR041995 | - | |
| Car02g02023 | 344 | Pfam | Domain of Kin17 curved DNA-binding protein | 1 | 124 | IPR019447 | - | |
| Car02g02023 | 344 | Gene3D | - | 288 | 344 | IPR014722 | - | |
| Car02g02023 | 344 | Coils | Coil | 207 | 227 | - | - | |
| Car02g02023 | 344 | Gene3D | - | 7 | 107 | IPR038254 | - | |
| Car02g02023 | 344 | SMART | Kin17_mid_2 | 1 | 125 | IPR019447 | - | |
| Car02g02023 | 344 | Coils | Coil | 103 | 133 | - | - | |
| Car02g02023 | 344 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 344 | IPR037321 | - | |
| Car02g02023 | 344 | Gene3D | - | 234 | 287 | - | - | |
| Car02g02023 | 344 | PANTHER | BNAA05G13760D PROTEIN | 1 | 344 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car02g02023 | Car-Chr2 | 50676444 | 50677478 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car02g02023 | 1 | 344 | C2H2 Transcription Factor Family | AT1G55460 | 65.289 | 2.35e-166 | 468 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car02g02023 | K13102 | - | gmx:100784271 | 587.8 |