Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g02021 ATGAGTTTCTTTTCATGTTGTACATCACCACAAGAGAAGAACAACAAGAACTCATCGAAGAAGAACATCAAGAACAATCGTGACATTTGTTTTAAATCTGATAGTGGCAAAAGGAAGTACTTAGAGGAAGAAGTCACAAAACCTGGAAATGGAAATATTACTTCTAAGATATTTTCTTACCATGAGCTATGTGTTGCAACTAAGAATTTTCACAACAGCAACATGGTTGGTGAAGGAGGATTTGGGAGAGTATACAAAGGACGCATTAAAAGCCTAGACAATAAGGTTGTTGCTGTAAAGAAACTTAATAGAGATGGATTTCAAGGAAGCAGGGAATTTCTTGCAGAGGTTTTGATTTTGAGTTTCTTGCATCACTCTAACCTTGTCAATTTAGTAGGGTATTGTTCTGAAGGTGATCAAAGGATTTTGGTATATGAGTACATGATCAATGGTTCTTTAGAAGATCACCTTTTTGAGTTACCTTCTGGGGGAAAGCCtttggactggaatactagaatgaaaattgcagaaggtgctgcaaaaggacttgaatacttacatgcagaagcaaatccaccggtgatatatcgcgatttcaaagcagcaaacatactattagacgaaaatttcaatccaaaactatctgattttggccttgcaaagcttggcccgacaggcgataaaacgcatgtgtcgactagagtgatgggaacttatggctattgtgcacctgagtatgcttcaacaggtaaattgactacaaggtcagatgtttatagctttggagtagtgtttttagagatgatcacagggagaagAGTGCTTGATTATTCAAGACCATCTGAAGAGCAAAACTTAGTCACTTGGGCATTACCACTACTAAAAAACAAAAGAAAATATACATCAATAGTTGATCCATTGTTAAAAGGAAACTACCCAATGAGGGGTTTATTCCAAGCACTAGCAATTGCAGCAATGTGTCTATTGGAGGATGGTAGTGCTCGACCTTTGATTGGTGATGTAGTTACAGCTCTTGGAGTTTTATCAAAGAGACATGTACAAGTTGGTAAACAAAAACATTCAAATGAAACTTGTGATGAGCATGGAGAATGCAGTTGA 1119 0.2609 MSFFSCCTSPQEKNNKNSSKKNIKNNRDICFKSDSGKRKYLEEEVTKPGNGNITSKIFSYHELCVATKNFHNSNMVGEGGFGRVYKGRIKSLDNKVVAVKKLNRDGFQGSREFLAEVLILSFLHHSNLVNLVGYCSEGDQRILVYEYMINGSLEDHLFELPSGGKPLDWNTRMKIAEGAAKGLEYLHAEANPPVIYRDFKAANILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGKLTTRSDVYSFGVVFLEMITGRRVLDYSRPSEEQNLVTWALPLLKNKRKYTSIVDPLLKGNYPMRGLFQALAIAAMCLLEDGSARPLIGDVVTALGVLSKRHVQVGKQKHSNETCDEHGECS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g02021 372 CDD STKc_IRAK 76 345 - -
Car02g02021 372 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02021 372 ProSitePatterns Protein kinases ATP-binding region signature. 76 101 IPR017441 GO:0005524
Car02g02021 372 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 372 - -
Car02g02021 372 SUPERFAMILY Protein kinase-like (PK-like) 52 345 IPR011009 -
Car02g02021 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Car02g02021 372 PANTHER OS07G0668900 PROTEIN 1 372 - -
Car02g02021 372 Gene3D Transferase(Phosphotransferase) domain 1 148 369 - -
Car02g02021 372 Pfam Protein kinase domain 70 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g02021 372 MobiDBLite consensus disorder prediction 1 21 - -
Car02g02021 372 MobiDBLite consensus disorder prediction 1 16 - -
Car02g02021 372 Gene3D Phosphorylase Kinase; domain 1 42 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g02021 Car-Chr2 50669640 50673814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g02021 42 348 Glycoside Hydrolase AT3G07070 64.169 1.42e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Car02g02021 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g02021 - - gmx:100798032 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g02021 02 50669640 50673814 Car05g00957 05 49974561 49978091 ECH
Car02g02021 02 50669640 50673814 Car02g02021 02 50669640 50673814 ECH
Car05g00957 05 49974561 49978091 Car02g02021 02 50669640 50673814 PCT