Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01974 ATGGTTTTGAAGGGTTTTTCCTTTCTAATTATCCTTTTGATATTCTCCTTTGTTGTGGAAGCCATTTCTAGGAATCACAATCACAATATTTTCAACAAAAATGGATCTTCTCTTGCTGCAATAAAGTTTCCAGATCATCCAAGTTTCAATGTTGTCTCATCTTCAGAAGACACTGATTGTAGTTTCTCAAATTCACAAAAATTTGAACATTCTAAAGCTACCATCAATTCAAGTGAAGAAACTGATGTTGAAGATGAAAAGGGTGAAACTTTTCTATCTGCAAATCCAAAAAAGCAACCTTTGAAGCTCCATTTGAAACACATATCAATGAATAATGATATTGAGCCTAAAAAATCAGTAATTGATTTCACAACAAGAGATTTAACAAGAATTCAAACCCTTCACACAAGGGTCACAGAAAAGAAGAATCAAAACACATTTTCAAGGCTGCAAAAAACAACAAAGCAATCCTACAAGCCAGCAGCCGTTGCTCCGGCCGTGTCGGCTTCGCCGGAATATTCTAGTCAGCTAGTGGCAACTTTGGAATCAGGTGTGAGTCTTGGTTCTGGTGAGTATTTCATGGATGTGTTTATTGGAACACCTCCTAAACATTTTTCTCTAATACTTGATACTGGTAGTGACCTTAATTGGATTCAATGTGTTCCTTGCATTGCATGTTTTGAACAAAGTGGACCCTATTATGATCCTAAAGAATCAACTTCTTTTAAGAATATAACATGTCATGATCCTAGGTGTCAATTAGTTTCATCACCTGATCCACCTAAGCCTTGTAAAGATGAGAATCAAACATGTCCTTACTTTTATTGGTATGGTGATAGTTCAAATACAACAGGTGATTTTGCATTAGAAACTTTCACTGTTAACCTCACAACAAGTAATGGAAATTCAGAACTTAAACATGTTGAGAATGTGATGTTTGGTTGTGGTCATTGGAATAGAGGACTATTTCATGGTGCTGCTGGTTTGTTAGGATTAGGTAGAGGACCATTATCATTTGCTTCTCAGCTTCAATCTTTATATGGTCATTCATTTTCCTATTGTCTTGTGGATAGAAATAGTAACACAAGTGTTAGCAGCAAGTTGATTTTTGGTGAGGATAAAGAGCTTCTTAGCCACCCAAATTTGAATTTCACTTCTTTTGTTGGTGGTGAAGAGAATTCAGTTGATACATTTTACTATGTTAAGATAAAATCTGTTATGGTTGACGGCGAGGCGGTGAAGATACCAGAAGAGACTTGGAATTTATCAGAAGGTGGTGGTGGTGGTACAATAATTGATTCTGGTACAACTTTAACTTATTTTGCTGAACCTGCTTATGAGATTATTAAAGAAGCTTTTATGGAGAAAATTAAAGGGTATGAACTTGTTGAAGGACTTTTTCCTTTGAAGCCATGTTATAATGTATCAGGTATTGAAAAAATGGAGTTACCTGATTTTGGGATATTATTTTCTGATGGGGCAGTTTGGGATTTTCCTGTGGAGAATTACTTTATTCAGATTGATGCTGATGTTGTTTGTTTGGCTATTTTGGGGACTCCTAAGTCTGCACTTTCAATTATTGGAAACTATCAGCAGCAGAATTTTCATATAGTTTATGATATGAAGAAATCAAGACTTGGTTATGCACCAAGGAATTGTGCTGATTTTCACCAGTATCAGGTTGTTGGAAGGGCTCTTCCCACTGAAACCGAAGAACACCCTAAGATTTATCGCATGAAACTTTGGGCCACTAACGAGGTTCGTGCCAAATCCAAGTTTTGGTATTTCTTGAGGAAGTTGAAGAAGGTTAAGAAAAGCAATGGACAAGTGCTGGCCATCAATGAGATCTTTGAGAAAAATCCCACCAAGATCAAGAACTATGGAATTTGGTTGAGATACCAGAGTCGTACTGGTTACCACAATATGTACAAGGAATACCGTGACACTACTCTCAACGGTGCTGTCGAGACAATGTACAATGAAATGGCATCTCGTCATAGGGTGAGGTTTCCATGCATCCAAATCATTAAGACTGCCACAATCCCAGCTAGTCTCTGCAAAAGGGAGAGCACCAAGCAGTTCCACAATTCCAAAATCAAGTTCCCATTGGTGTACAAGAAGATTAGGCCACCAAGTAGGAAGCTCAAAACAACATACAAAGCAAACAAGCCAAATTTGTTCATGTGA 2187 0.3727 MVLKGFSFLIILLIFSFVVEAISRNHNHNIFNKNGSSLAAIKFPDHPSFNVVSSSEDTDCSFSNSQKFEHSKATINSSEETDVEDEKGETFLSANPKKQPLKLHLKHISMNNDIEPKKSVIDFTTRDLTRIQTLHTRVTEKKNQNTFSRLQKTTKQSYKPAAVAPAVSASPEYSSQLVATLESGVSLGSGEYFMDVFIGTPPKHFSLILDTGSDLNWIQCVPCIACFEQSGPYYDPKESTSFKNITCHDPRCQLVSSPDPPKPCKDENQTCPYFYWYGDSSNTTGDFALETFTVNLTTSNGNSELKHVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQSLYGHSFSYCLVDRNSNTSVSSKLIFGEDKELLSHPNLNFTSFVGGEENSVDTFYYVKIKSVMVDGEAVKIPEETWNLSEGGGGGTIIDSGTTLTYFAEPAYEIIKEAFMEKIKGYELVEGLFPLKPCYNVSGIEKMELPDFGILFSDGAVWDFPVENYFIQIDADVVCLAILGTPKSALSIIGNYQQQNFHIVYDMKKSRLGYAPRNCADFHQYQVVGRALPTETEEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVETMYNEMASRHRVRFPCIQIIKTATIPASLCKRESTKQFHNSKIKFPLVYKKIRPPSRKLKTTYKANKPNLFM 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01974 728 Gene3D - 555 621 - -
Car02g01974 728 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 7 555 - -
Car02g01974 728 SUPERFAMILY Acid proteases 184 556 IPR021109 -
Car02g01974 728 Hamap 50S ribosomal protein L18Ae [rpl18a]. 556 619 IPR028877 -
Car02g01974 728 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 557 678 IPR023573 GO:0003735|GO:0005840|GO:0006412
Car02g01974 728 Gene3D Acid Proteases 167 372 IPR021109 -
Car02g01974 728 SUPERFAMILY RplX-like 621 696 - -
Car02g01974 728 PANTHER ASPARTYL PROTEASES 7 555 IPR001461 GO:0004190|GO:0006508
Car02g01974 728 Pfam Xylanase inhibitor C-terminal 399 549 IPR032799 -
Car02g01974 728 Gene3D Acid Proteases 373 554 IPR021109 -
Car02g01974 728 Gene3D - 622 697 - -
Car02g01974 728 Pfam Xylanase inhibitor N-terminal 192 371 IPR032861 -
Car02g01974 728 CDD pepsin_A_like_plant 191 553 IPR034161 -
Car02g01974 728 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 207 218 IPR001969 GO:0004190|GO:0006508
Car02g01974 728 PRINTS Pepsin (A1) aspartic protease family signature 525 540 IPR001461 GO:0004190|GO:0006508
Car02g01974 728 PRINTS Pepsin (A1) aspartic protease family signature 198 218 IPR001461 GO:0004190|GO:0006508
Car02g01974 728 PRINTS Pepsin (A1) aspartic protease family signature 430 441 IPR001461 GO:0004190|GO:0006508
Car02g01974 728 ProSiteProfiles Peptidase family A1 domain profile. 192 549 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01974 Car-Chr2 50244385 50250688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01974 556 728 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.329 1.05e-113 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01974 K22683 - zju:107416111 1083.17