Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01961 ATGGATAATTCAAATGAAGCATCATCATCATCATTGAGTTTTGTATCATCTCACTTATCAAATGGTTGTTCAAGTAATAATCACAACATAACTTCCTCAACCAACAATGATAATGGTGCAAACATTGAAATTGTGAGTTTGAATAAGCTAAGTGGAAGCCTTGAGAAGTTAATATTGGGTGATATTGATTATGATTATTGTGATGCTGAGATTCTTGTTGAAGAAATCCCGGTCGGTATTCATCGATGTATATTGGCTTCAAGAAGTCAGTTTTTTCATGAGCATTTTAAGAAAGGGAAAGATGGAGGAGTGAAGGAAGGAAAACCAAGGTATTTTATGAAAGAATTGGTGCCTTATGGTAATGTTGGATATGAAGCTTTCCTTGCTTTCTTGCATTATTTGTACACTGGAAAGTTAAAGGCTTCACCATTAGAAGTGACAACATGTGTTGATGAATCATGCATTCATGATGCATGTCGCCCCGCTATCAATTATGCTTTGGAGCTCATGTATGCTTCTGTTGCTTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGGTATCTCCTAAATTTTGTTGACAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGACTGCACATCACTGCCAACTAGACCAGCTTCTCTCTCAGTGCATTCAGAGAGTAGCAAGGTCTGACTTGGACATCATATCTTTGGAAAAAGAACTTCCTCATGACGCTGTGACCGAAATCAAATTGATCCGAGTCCAATCTCTACCAGAATTGGCTCCAGATGCAATGGAAGTTGAACCTGTGAAAGATAAGAGTATTAGGAAAATCCTCAAAGCTTTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTTTAGATGAATCTAGTGTCACTCTTGATGATGCCTATGCTCTACACTATGCTTGTGCATATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTAGCCTAGGATTGGCTGATATTCTCCTTAAAAATCCACGAGGATACACGGTTCTTCATGTGGCCGCAAGGCGAAAGGATCCGTCCATTTTGGTTGCTTTACTGAAAAAAGGAGCTTGTGCTTCAGAAACCACTCTGGATGGACAAACCGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTCACAAGGACAGGCTATGTGTTGATTTGCATATGGTTCTTCCCTGCTGAGGCAAGGGTAGCCATAGAGAATGCTGAGGCAGATTCCACATCACTCTATGCAACTTCATCAGCTTTAAAGGGAAATATAAAAGAAGTAGACCTAAATGAAACACCTTCTGTTAGAACAAGAAAGCTCCAATTAAGACTACAATCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCGCATTGTTCTGAGGTGCTTGATAAGTATTTGGAGGATGATACGCCCGATGTTTTCGTCCTCGAGAAAGGCACTGAAGAAGAGCAAAGAACGAAGAAAGCACGGTTCATGGAACTTAAAGACGAGGTGCAGAAGGCATTTCATAAGGATATGGCTGAAAACAACCATTCAGGTTTTTCGTCTACACTGTCTTCGACATCAACATCGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGGAAAGTCTTAACCACAAATTGAGGAAAAAATAA 1707 0.3702 MDNSNEASSSSLSFVSSHLSNGCSSNNHNITSSTNNDNGANIEIVSLNKLSGSLEKLILGDIDYDYCDAEILVEEIPVGIHRCILASRSQFFHEHFKKGKDGGVKEGKPRYFMKELVPYGNVGYEAFLAFLHYLYTGKLKASPLEVTTCVDESCIHDACRPAINYALELMYASVAFQMKELVLLFQRYLLNFVDKALVEDVIPILMTAHHCQLDQLLSQCIQRVARSDLDIISLEKELPHDAVTEIKLIRVQSLPELAPDAMEVEPVKDKSIRKILKALDSDDVELLKLLLDESSVTLDDAYALHYACAYCDSKVVQEVLSLGLADILLKNPRGYTVLHVAARRKDPSILVALLKKGACASETTLDGQTAXXXXXXXXXXXXXXXXXXXSLTRTGYVLICIWFFPAEARVAIENAEADSTSLYATSSALKGNIKEVDLNETPSVRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKYLEDDTPDVFVLEKGTEEEQRTKKARFMELKDEVQKAFHKDMAENNHSGFSSTLSSTSTSNXXXXXXXXXXXXXXXXXXXXRESLNHKLRKK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01961 568 SMART ANK_2a 299 329 IPR002110 GO:0005515
Car02g01961 568 SMART ANK_2a 333 362 IPR002110 GO:0005515
Car02g01961 568 MobiDBLite consensus disorder prediction 516 543 - -
Car02g01961 568 Pfam Domain of unknown function (DUF3420) 228 276 IPR024228 -
Car02g01961 568 PANTHER REGULATORY PROTEIN NPR3 400 538 IPR044292 GO:0009862|GO:2000022|GO:2000031
Car02g01961 568 CDD BTB_POZ_NPR_plant 48 193 - -
Car02g01961 568 Coils Coil 558 564 - -
Car02g01961 568 ProSiteProfiles Ankyrin repeat profile. 333 358 IPR002110 GO:0005515
Car02g01961 568 Pfam Ankyrin repeats (3 copies) 281 358 IPR002110 GO:0005515
Car02g01961 568 Pfam BTB/POZ domain 65 162 IPR000210 GO:0005515
Car02g01961 568 Gene3D Potassium Channel Kv1.1; Chain A 32 225 IPR011333 -
Car02g01961 568 PANTHER REGULATORY PROTEIN NPR3 6 371 IPR044292 GO:0009862|GO:2000022|GO:2000031
Car02g01961 568 MobiDBLite consensus disorder prediction 521 540 - -
Car02g01961 568 Pfam NPR1/NIM1 like defence protein C terminal 400 533 IPR021094 -
Car02g01961 568 SMART BTB_4 67 193 IPR000210 GO:0005515
Car02g01961 568 SUPERFAMILY POZ domain 63 191 IPR011333 -
Car02g01961 568 ProSiteProfiles BTB domain profile. 67 143 IPR000210 GO:0005515
Car02g01961 568 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 400 538 - -
Car02g01961 568 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 6 371 - -
Car02g01961 568 SUPERFAMILY Ankyrin repeat 276 371 IPR036770 -
Car02g01961 568 Gene3D - 267 428 IPR036770 -
Car02g01961 568 ProSiteProfiles Ankyrin repeat region circular profile. 333 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01961 Car-Chr2 50148521 50151425 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car02g01961 NPR1_like_C 2.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01961 K14508 - gmx:100816582 537.339