Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01944 ATGATTACCACAATCCTCAGAAGAGCTTCTTCATCTCTCTCAAGGCGTTCAATCACCGCCGCCGCCGATACTCTCCTCGCCTCCACCGCCTCTGGCGAGCTCCGACAACTCTCCGTCCTCGCAGCAAGGTCATTTCACTCTAAATCACAACCCTTGCTATTCCGCGCTTCTTTGTCTTCTCGCGCTGGGTTCGCCGCCGAAGCTTTTCCATATGAAGAACCGTTGAAAGCGAACAGCGACGATGGCCTTGAGATCGCGAAGCTAGGGATTTCTCAGGATATTGTTTCTGCTTTGGCTAAGAAAGGAATCACTAAGCTTTTCCCCATTCAGAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCTATCATGGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCCCCGACTAGAGAACTTGCAAAGCAGGTTGAAAAGGAATTCTATGAGGCGGCTCCTAACTTGGATACTATCTGTGTTTATGGTGGTACGCCCATCTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGCACACCTGGACGTATTATTGATCTTCTTAATAGAGGTGCTCTGAATTTGAAGGAAGTTCAGTTCGTTATTCTTGATGAAGCCGATCAGATGCTTCAAGTAGGCTTTCAGGAAGACGTGGAGAAGATCTTGGAAAGGTTGCCTGCAAAGAGACAGACTCTTATGTTCTCTGCCACCATGCCAACTTGGATAAAGCAGTTAACACGCAATTACCTAAAAGATCCTCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCAGTTGCGTCAGATTCGTACGTTAAAGCAGGAATTCTTGTTCCTCTTATAAAAGAGCATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGACGCTGATCGATTATCACATGGTATGTCTAAAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGAGAAAGAACTCTTGCTGGCTTCAGAAGTGGCGATTTTAATGTTTTAGTGGCGACCGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTAATTCATTACGAGCTTCCCAATAATTCAGAGATATTTGTCCACCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTCATTTATACAGAAGATCAATCCAGGACTCTTAGGACTATTGAGCGTGATGTAGGTTGTAGATTTAAAGAGTTACCCAAGGTTGCCGTTGATAGTGCATCAGTGGACGCATTTGGTAGCATGGGTGGTGGGCGATTTGGCTCTTTTGGAGGTTCGAGGGGTCGATTTAGTGATGCAGGTTTTGGCCGTGATGCTGGACCTAGCCGTTCTGGGGGCTACGGTGGTAATTCAGGGGGAAGGTTTTCTGGTGAAAGTAGTTTTGGCAGATCAAACTCTGGTCGCTTCGGCTCCTTTGGTTCCTCTCAATCACATAATTCAGGAAGTAGATCTGGTGAATCACCCAGTGAATTTAAATTTAGTCGACCCGGCGGATTCAGCGGCTCAGATCGGTCTGGTGGTTTTGGTGGATTCGGCGGTTCAGATCGCTCCAGCGGTTTTGGAGATTTTGGCTCAAGTAACTCTAGCCCATTTGGCGGTCGTGGCAGATCGGAATGA 1779 0.4615 MITTILRRASSSLSRRSITAAADTLLASTASGELRQLSVLAARSFHSKSQPLLFRASLSSRAGFAAEAFPYEEPLKANSDDGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPLTIDLVGDSDQKLADGISLYSVASDSYVKAGILVPLIKEHAKGGKCIVFTQTKRDADRLSHGMSKSIPCEALHGDISQAQRERTLAGFRSGDFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYTEDQSRTLRTIERDVGCRFKELPKVAVDSASVDAFGSMGGGRFGSFGGSRGRFSDAGFGRDAGPSRSGGYGGNSGGRFSGESSFGRSNSGRFGSFGSSQSHNSGSRSGESPSEFKFSRPGGFSGSDRSGGFGGFGGSDRSSGFGDFGSSNSSPFGGRGRSE 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01944 592 MobiDBLite consensus disorder prediction 507 543 - -
Car02g01944 592 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 518 - -
Car02g01944 592 SMART helicmild6 342 422 IPR001650 -
Car02g01944 592 CDD SF2_C_DEAD 314 431 - -
Car02g01944 592 SMART ultradead3 102 305 IPR014001 -
Car02g01944 592 MobiDBLite consensus disorder prediction 573 592 - -
Car02g01944 592 MobiDBLite consensus disorder prediction 488 592 - -
Car02g01944 592 Gene3D - 312 465 IPR027417 -
Car02g01944 592 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Car02g01944 592 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
Car02g01944 592 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 35 518 - -
Car02g01944 592 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Car02g01944 592 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
Car02g01944 592 Pfam Helicase conserved C-terminal domain 316 422 IPR001650 -
Car02g01944 592 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Car02g01944 592 CDD DEADc 94 289 - -
Car02g01944 592 Gene3D - 84 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01944 Car-Chr2 49809470 49814259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01944 72 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.418 6.13e-72 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01944 - - gmx:100778436 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g00865 05 46830321 46835893 Car02g01944 02 49809470 49814259 PCT