Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01942 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACATAGTGTAATGGAAGATAAAGGCCTAGGGCAGGATGCTAATAATATCCATAGATCAATAGGTAATGAATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATTAACTTGGAGGCGCAATATGAGAGTGACGGGGAACCAGATGGTGCCTGTAGACTGCAAAAGGAGGGAACAGCTGATGATAGAGATGCTTTGAGAGAATCCAACTTACAGACTGCTGGTAGTAAAACATCTATGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAACCAATGCGCCCTCAAAATGGTTCCGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGGGGGTCCGAAGATAACTCATTGGATGGTGAAACAGGAAGGCTTGACTCAGAAGATGATGTTGAAAAAAAGGATGCAGGTAAAGGCCCAAGAAGCCACTCTGATGTTCCTGCAGATCAGATGTTGTCTGATGAATATTATGAGCAAGACGGGGAAGATCAAAGTGACTCATTGCATTATAACGGGATTCACAAGCCTGCTGGACCGAATTCATGGTCCCGAAAGATGTCTACTTCTGTGAATAGAAATGTGCGTAAGAAATCTCGGATTTCAgatgacgatgatgatggtgatgttgattatgaagaagaggatgaagtagatgAAGATGATCCTGATGATGAAGATTTTGAGCCTGCCGCGAGTAGTCATACTTTAAACAAGGATAAAGATTGGGAAGGTGAAGGGTCAGATGAAAATGATGACAGTGAAGAAAATCTAGATGTCTCTGATGATGACGAATCTTTCTATGCCAAAAAACCCAAGGGAAGGCAACAAAGTAAGGTTAGAAAGAGTATAAAATCTACAAGAGATCGCAAAACATGTGTTGCATCTGGCAGACAAAGAAGATTCAAATCATCTTTTGAAGACAATGAGTCAGTAACAGAGGATTCTGACAGTAATAGTGATGACGATTTCAAAAGCACAAAAAAGAGAAGTTTCCATGTCCGCAAGAATAACAGCCGCTTTTCTGTATCCAACAGTGAGGTTCGCACTTCTACTAGGGCAGTTAGGAAGATATCATATGTTGAAAGTgaagaaagtgaagaagctgatgaagggaagaagaaaaagTCTCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGTACAGCTGAAGATGCTCAAAGGAATAATAGATCAACCGAACCCAGTTTAACTAGTCACTTATTTGATTCTGAATTTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAGGGGCAGTCTCATTTGCACTGCCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGACAATCTCGAGAGAGGAGATTGAGGTCTATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATCAGCCAAGATAATTCTGGCAATGTTATTCCAGAATACctggtcaagtggcaaggactatcttatgctgaagttacttgGGAAAAGGACATTGATATTGCTTTTGCTCAACATTCAATTGATGAGTATAAGGCTCGAGAGGCTGCAATGTCCTTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGACTGGTTGATGGGTGGAAAGCTCCGTGATTATCAGCTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAACGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCATTGTCTACATTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATAATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGACAAAAAGCCTGGTAAGCCAATAAAATTCAATGCACTGTTGACTACATATGAGGTAGTTTTGAAAGATAGGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGCGAGGCGCAGTTGTATACCACACTTTTAGAATTTAGCACCAAAAATAAGTTGCTCATCACCGGCACCCCTTTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCATAACAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCTTTTCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCAAAATTTAAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGAGACTCTGGAGGTAGTGACAACAGTAAACTGGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTAATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGGCTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCCATGGAGCATTTCAATGCGGTTGGTAGTGATGATTTTTGTTTCCTTCTTTCCACACGAGCAGGAGGTCTGGGTATCAACCTTGCCACGGCAGACACTGTCATTATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGACGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCCGAAGGTCGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGATAAAAATGAGTTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGGAACGACGAAGAAAGCAAGAAACGGCTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGACAGATGAGGCGGAACAAGGCCACGAATTATTAAGTGCTTTTAAGGTTGCCAATTTTTCCAATGATGAAGATGATGCAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTTCAAGCAGAGGATGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAGAGGAGTAATAAAAGGAAAAAGAAGGAACCTGAACCACCTGAGCGAGTTCAGAAACGCCGTAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCCTGTGTGCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGACTATCTCGTGCAGTTATGAAATTCGGGAATGAGAATCAAATCGACTTAATTGCCGCTGACGTTGGTGGTGCAGTTGCAGCAGCTCCACATGAAGCGCAGATTGAACTTTTCAATGCTCTAATTGATGGCTGTTCAGAAGCAGCGGAACATGGAAATCTGGATTTAAAGGGCCCCGTGCTGGATTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATTAGCCGGTATGAAGATCCCATTGCACAATTCCGTGTTTTATCGTATCTTAAGCCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTAGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGATAGGCTTGGCCTCATGAAAAAAATAGCACCCGTAGAACTCCAAAACCATGAAACTTTCTTGCCGCGAGCTCCAAATTTAAGAGATCGGGCAAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAACGTGAATAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAAAGACCATATGGTGAGTATCTCACTGTTGCGTGGACAGGAGAAGAAGAAAAAGTTGGGTGTTAATGTTCAAATGAGAAAAGATAGGTTTCAGAAACCCCAAAAGGCTGAACCTATTGTAAAAGAGGAAGGTGAAATGTCCGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAGTGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGGCTTCACAGATTGCAGACAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGAAAGATTGATCAAATTGTGTTAGAAAATGAAGTGGAACCCTACAAGCAAGATAGAATGACTGTACGATTGTGGAAATATGTATCCACCTTTTCCCATCTTTCTGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAAGAACAAGATGATGAGGCTGGGGCATGGAAACGAAGAAGAAGATCTGAAAGTGAGGATCATTTCCAGTCTCAGCCACCACCTCAAAGAACCATGACTAATGGAATTCGGATTGCCGATCCTAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGTTTTGTTAGTGAGAAACCTTTTAGGACACAACCTGGTGCATTTCCTTCAAGTCAAGGTTTTTCTTCATAG 5073 0.3968 MAFFRNFVNDTVSHSVMEDKGLGQDANNIHRSIGNECTDATSSEKEFDINLEAQYESDGEPDGACRLQKEGTADDRDALRESNLQTAGSKTSMVGRWGSTFWKDCQPMRPQNGSESGKESKSGSDYRNAGGSEDNSLDGETGRLDSEDDVEKKDAGKGPRSHSDVPADQMLSDEYYEQDGEDQSDSLHYNGIHKPAGPNSWSRKMSTSVNRNVRKKSRISDDDDDGDVDYEEEDEVDEDDPDDEDFEPAASSHTLNKDKDWEGEGSDENDDSEENLDVSDDDESFYAKKPKGRQQSKVRKSIKSTRDRKTCVASGRQRRFKSSFEDNESVTEDSDSNSDDDFKSTKKRSFHVRKNNSRFSVSNSEVRTSTRAVRKISYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQRNNRSTEPSLTSHLFDSEFDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVYDVSKEMDLEIIRQNSQVERIISDRISQDNSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSFQGKVVDSQRKKSKASLRKLEEQPDWLMGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDRAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDHNKFKSKDDFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAVGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKTDEAEQGHELLSAFKVANFSNDEDDASFWSRWIKPDAVFQAEDALAPRSARNIKSYAEADPSERSNKRKKKEPEPPERVQKRRKAEYSAPAVPMVDGACVQVRSWSYGNLSKRDALRLSRAVMKFGNENQIDLIAADVGGAVAAAPHEAQIELFNALIDGCSEAAEHGNLDLKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDDRLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVGRKPSKKEKDHMVSISLLRGQEKKKKLGVNVQMRKDRFQKPQKAEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRKIDQIVLENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQDDEAGAWKRRRRSESEDHFQSQPPPQRTMTNGIRIADPNSLGILGAGPSDKRFVSEKPFRTQPGAFPSSQGFSS 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01942 1690 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1632 - -
Car02g01942 1690 SMART chromo_7 404 487 IPR000953 -
Car02g01942 1690 SMART chromo_7 517 576 IPR000953 -
Car02g01942 1690 Pfam SNF2-related domain 630 899 IPR000330 GO:0005524|GO:0140658
Car02g01942 1690 Gene3D - 391 519 - -
Car02g01942 1690 CDD CD1_tandem 404 484 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 224 246 - -
Car02g01942 1690 Pfam Domain of unknown function (DUF4208) 1519 1611 IPR025260 -
Car02g01942 1690 Coils Coil 1125 1152 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 105 135 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 247 263 - -
Car02g01942 1690 Gene3D - 602 841 IPR038718 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 54 405 - -
Car02g01942 1690 ProSiteProfiles Chromo and chromo shadow domain profile. 519 583 IPR000953 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 1619 1690 - -
Car02g01942 1690 Gene3D - 842 1072 IPR027417 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 376 405 - -
Car02g01942 1690 Gene3D - 521 573 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 82 96 - -
Car02g01942 1690 SMART DUF4208_2 1507 1612 IPR025260 -
Car02g01942 1690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 795 IPR014001 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 1202 1230 - -
Car02g01942 1690 Gene3D - 1338 1441 - -
Car02g01942 1690 Coils Coil 1071 1091 - -
Car02g01942 1690 CDD SF2_C_SNF 917 1052 - -
Car02g01942 1690 SMART helicmild6 957 1041 IPR001650 -
Car02g01942 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 832 IPR027417 -
Car02g01942 1690 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1632 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 1635 1651 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 305 328 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 138 161 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 1195 1232 - -
Car02g01942 1690 Pfam Chromo (CHRromatin Organisation MOdifier) domain 520 574 IPR023780 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 355 375 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 264 280 - -
Car02g01942 1690 Pfam Helicase conserved C-terminal domain 928 1041 IPR001650 -
Car02g01942 1690 ProSiteProfiles Chromo and chromo shadow domain profile. 406 494 IPR000953 -
Car02g01942 1690 SUPERFAMILY Chromo domain-like 498 574 IPR016197 -
Car02g01942 1690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 931 1082 IPR001650 -
Car02g01942 1690 SMART ultradead3 607 806 IPR014001 -
Car02g01942 1690 SUPERFAMILY Chromo domain-like 403 486 IPR016197 -
Car02g01942 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1117 IPR027417 -
Car02g01942 1690 MobiDBLite consensus disorder prediction 1619 1634 - -
Car02g01942 1690 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01942 Car-Chr2 49769147 49786825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01942 633 1068 RAD5 or RAD16-like Gene Family AT1G02670 26.535 1.20e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car02g01942 SNF2_N 8.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01942 K11367 - gmx:100808039 2805.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01942 02 49769147 49786825 Car02g01942 02 49769147 49786825 ECH