Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01936 atgacttcggatcttagcagaactggttctgtagaaagagacattgagcaggccattactgctttgaaaaaaggggcttgcttgctcaagtatggcagaaggggaaagcccaagttttgcccgtttcggctttctaatgatgaatctgttttgatatggttctcagggaaagaagagaagcaccttaaactgagccatgtctctagaattatatctggacaacgcacaCCCATCTTTCAAAGATATCCGCGACCTGAGAAGGAATACCAGTCGTTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGCTTGAAAGCATTAATTTCGCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACAAGAAGAAGTTCCCCCTTACATTCTCCATTTGGTAGTAATGAGAGCCTGCAAAAGGATAGTGGGGATCATCTTCGCCTTCATAGCCCGTACGAGAGCCCCCCTAAAAATGGTTTGGATAAAGCATTAGATGTGGTCTTGTATGCAGTTCCTCAAAAAGGTTTCTTACCTCCGGATTCtgcaagtgcttctgtccactctgtatcatccggaggatcagatagtatgcatggtcacatgaagacaatgggtatggatgctttTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGTCAAGGTTCTGGTCACGATGATGGCGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCATAGGTGATGGTGTTCTTGGTGGTGGTAATCATCGAGTTGGGAGTTGTTCGGGTGTAAAAATTGATTCTCTATTTCCCAAAGCCTTAGAATCTGCGGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGACATGCAGCCTTAGTGACCAAACAAGGTGAAATGTTCTCCTGGGGGGAGGAATCAGGAGGCAGGCTTGGACATGGTGTAGACTCTGATGTTCTCCATCCAAAACTTATAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCAGGTGATCTTTATACATGGGGTAATGGCACATACAATTATGGTCTTCTGGGGCATGGAAACCAAGTGAGCCATTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAAGGCATACACGTTTCATATATTTCATGTGGACCATGGCATACTGCTGTTGTAACATCTTCTGGGCAATTATTCACTTTCGGGGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTGCCAAGGGAAGTAGAGTCCCTCAAAGGTCTTCGTACTATGCGGGCTTCTTGTGGTGTTTGGCATACTGCCGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCACGGTGATAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTGGTTGAACATAACTTTTGTCAAGTTGCCTGTGGACACAGTCTCACTGTTGCACTTACCACCTCAGGCCATGTCTATGCGATGGGAAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACCCGAGTTGAAGGAAAACTGTCGAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTCTAACTTTAAGGAATGAAGTTTACACCTGGGGGAAAGGTGCAAATGGACGTTTAGGCCACGGGGATACAGATGATAGAAATACTCCAACACTAGTAGATGCTCTGAAAGACAAACATGTGAAGAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATCTGTCTGCATAAATGGGTTTCTGGTGTTGACCAGTCTATGTGTTCAGGCTGTCGTCTTCCATTCAATTTCAAAAGGAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCTCCAAACCCCAACAAACCTTATCGTGTGTGTGATGGTTGTTTAAATAAACTTAGGAAAACTTTAGAAAACGATTCTTCATCTCATTCTTCCATTAGCAGAAGAGGAAGTATTAATCACGGGTCTCTTGAGTTGATTGATAAGGATGATAAATTGGATACTAGATCTCGCAACCAAGTTGCCAAGTTTTCTTCGATGGAATCCTTCAAACAATGGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAGTTCAACAGTAGCCGTGTCTCTCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTAAATCCTGTTTTTGGATCTTCGAAGAAATTTTTCTCGGCTTCTGTTCCTGGATCTAGAATTGCTTCTCGGGCAACATCTCCAATATCAAGACGGCCTAGCCCACCTCGTTCAACTACTCCAACCCCAACACTGGGAGGTCTTACAACCCCAAAGATAGTTGTGGATGATGCTAAGAAGACTAATGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAGCTTGACTAGAAAAGCCCAACTTCAAGAAGTCGAGTTGGAAAGAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCGGGGAGGAAACTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGAGCTGTTAAGAATGTAAAATCACCTTCTCTTGCTTCTTTTGGTTCCACTGAAGTTAGCTGTGCTTCCATTGATCGATTAAATATTCAAGCGACAAGCCCAGAAGCAGATTTAACTGAATCAAATAACCCGTTACTTTCAAATGGATCAAGCACTGTCAATAATCGCAGTACAGGTCAGAATAAACAGAGCCAGTCAGATTCAACTAATAGAAATGGGAGCAAAACAAAGGATAGTGAATCCCGTAGTGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACACTCACCTCACTACCAGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAACGATTCAGTGAGAAACAAGCAGAGAATTGGTGGGCTGAGAATCGCACAAGAGTATATGAACAATACAATGTACGCATGATTGACAAGTCCAGTGTGGGTGTTGGGAGTGAGGACCTGACTCATTGA 3291 0.3908 MTSDLSRTGSVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLHSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFLPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGIGDGVLGGGNHRVGSCSGVKIDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEMFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTMRASCGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVALVEHNFCQVACGHSLTVALTTSGHVYAMGSPVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTLRNEVYTWGKGANGRLGHGDTDDRNTPTLVDALKDKHVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDGCLNKLRKTLENDSSSHSSISRRGSINHGSLELIDKDDKLDTRSRNQVAKFSSMESFKQWESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVPGSRIASRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVESLTRKAQLQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAVKNVKSPSLASFGSTEVSCASIDRLNIQATSPEADLTESNNPLLSNGSSTVNNRSTGQNKQSQSDSTNRNGSKTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAENWWAENRTRVYEQYNVRMIDKSSVGVGSEDLTH 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01936 1096 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1082 - -
Car02g01936 1096 MobiDBLite consensus disorder prediction 782 797 - -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Car02g01936 1096 Pfam Transcription factor BRX N-terminal domain 910 943 IPR027988 -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 770 797 - -
Car02g01936 1096 MobiDBLite consensus disorder prediction 129 185 - -
Car02g01936 1096 Gene3D - 491 660 IPR009091 -
Car02g01936 1096 Pfam FYVE zinc finger 649 715 IPR000306 GO:0046872
Car02g01936 1096 SMART fyve_4 647 716 IPR000306 GO:0046872
Car02g01936 1096 MobiDBLite consensus disorder prediction 971 1010 - -
Car02g01936 1096 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 721 IPR013083 -
Car02g01936 1096 Coils Coil 915 935 - -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 322 IPR000408 -
Car02g01936 1096 Pfam Transcription factor regulating root and shoot growth via Pin3 1022 1077 IPR013591 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 137 167 - -
Car02g01936 1096 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 416 426 IPR000408 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 208 227 - -
Car02g01936 1096 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 309 319 IPR000408 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 1011 1027 - -
Car02g01936 1096 CDD PH_PLC_plant-like 13 123 - -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 598 645 IPR000408 -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 544 593 IPR000408 -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 429 478 IPR000408 -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 493 541 IPR000408 -
Car02g01936 1096 Pfam Regulator of chromosome condensation (RCC1) repeat 374 426 IPR000408 -
Car02g01936 1096 CDD FYVE_like_SF 658 710 - -
Car02g01936 1096 Pfam Unstructured region between BRX_N and BRX domain 952 1016 - -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 592 613 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Car02g01936 1096 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Car02g01936 1096 Gene3D - 13 131 IPR011993 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 971 1027 - -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Car02g01936 1096 SUPERFAMILY FYVE/PHD zinc finger 649 719 IPR011011 -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 211 225 - -
Car02g01936 1096 Gene3D - 385 485 IPR009091 -
Car02g01936 1096 Gene3D - 211 384 IPR009091 -
Car02g01936 1096 SUPERFAMILY RCC1/BLIP-II 260 650 IPR009091 -
Car02g01936 1096 SUPERFAMILY PH domain-like 14 122 - -
Car02g01936 1096 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 653 715 IPR017455 -
Car02g01936 1096 MobiDBLite consensus disorder prediction 826 854 - -
Car02g01936 1096 ProSiteProfiles BRX domain profile. 1023 1078 IPR013591 -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 544 IPR000408 -
Car02g01936 1096 Coils Coil 859 900 - -
Car02g01936 1096 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Car02g01936 1096 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 16 1082 - -
Car02g01936 1096 Pfam Pleckstrin homology domain 16 122 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01936 Car-Chr2 49726510 49733690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01936 919 1087 Major Intrinsic Protein MIP AT1G31880 33.333 3.37e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01936 - - gmx:100802464 1941.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01936 02 49726510 49733690 Car02g01936 02 49726510 49733690 ECH
Car05g00840 05 45439685 45456889 Car02g01936 02 49726510 49733690 PCT