Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01935 ATGGAAGAATCGAGTGAGTTGCAACCAGAAGAAAATAAAGTCTCGATGGAGAAAAATGCAAAAAGAAAGCTCAAAACACCTGCACAACTTAAGGGCTTGGAGAAATTTTATACTGAGCACAAATATCCGACGGAGGAATTGAAAAAAGAAATTTCTGAGGTGTTAGGGTTGACAGAAAAGCAAGTGTCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGAATGTTGAAAGATGAAGCCAATGCCAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGACTCCTGCGGAAGCAGTAAGCACGGTGACTATAGGTATCTGGATCCGAAAGAGGTTGAGAGCCATGGCCTCTACAATCGTGATTTGTCAGTTGGAGATATGACCTATGGACGTACGAATCATTTTTCAGAAAATCTTAGTGGAATGGATGACACGTCATCTGAGAGTAGCTCTTTTTTGCAAGATCGGTTGTATCGTCAAGGTCAGGATCCATATGAGACGGATCCTTCTAGATATCTAACACCTAGTAAAGCTCTTCCACCCATAAATCCCAAGGGTGCGATTAACGCAGGATATAAACCATCGGGATATTTGAAACTGAAGGGTGAGATAGAACATGCTGCTATAACTGCCGTTAAGAAACAGTTAGGAAGGAATTATCGGGAAGATGGTCCACTGCTTGGTGTAGAATTTGATCCACTCCCTCCTGGGGCATTTGAATTCCAAACTGAAGACCCAGTTCACGAACCATACGATATTGCTGATCCTACTCTTCCGAATTCTCCAGAAATCTCCACAGTGAAAAGGCGACCTGGTCTTAACTCTAGATATGATTCATATTATACTAAACATAGTTCCCAAGATACTCATATGGAAGGAGTTGACTTTGGTTCCTTGCATGATTCCGATGTTCATGATAAACAAGATAAGAAAGCTTACCAGGGTACAAAACACAGACAAAATTTTCAGAGTTACGGTACTCATTTTCCTGGCCGAAACTCTTCCTTGGATTTGTATGAAGACTCAACTGGGGAAGCTGCTTATAAGAGCACTAAGAATCATAGGATGGAAACCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCTTCAAACCATAGTGATCACTATGAAGAAAACCGTGCAGTTAAAAATGCTGACTTTTTGCAATATGATAATGATAACATCAATCCAAAGAACATGCAAAGGAGTGTTCATGCAGACTTTCTGCAATACGACTATGATAACATCATTCCGAAGAATGCACAGAGGAGTGAACATGTAAAATCTAAACCTTCAAATTCGATCCGTAATTCTCGGGTTTCTCTGGATACTGAAGAAAGAGGGTTGTCTACTAGGATGGCTAAGGAAGAGATGTTTAAAGGGAACAAGAAGGCAAAGAAACAATATCGTGATGCAGGTGGAGCAGGGATGCTTGCCAATGAAACTACGGTTGCAAAACGACTTAAAGCCAATACGTTTCAGCAATACAATATGAAACAATTTCCTGCTGCTGAGATAGAACCAAGGAAAAATCAGAGATCTGCTGCAGAGATGCCATCCAGCTTTAGCGAGGATGAAACTGCCGACACAAGTTCCTCAATGGATTGA 1641 0.4156 MEESSELQPEENKVSMEKNAKRKLKTPAQLKGLEKFYTEHKYPTEELKKEISEVLGLTEKQVSGWFCHRRLKDKRMLKDEANANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYRYLDPKEVESHGLYNRDLSVGDMTYGRTNHFSENLSGMDDTSSESSSFLQDRLYRQGQDPYETDPSRYLTPSKALPPINPKGAINAGYKPSGYLKLKGEIEHAAITAVKKQLGRNYREDGPLLGVEFDPLPPGAFEFQTEDPVHEPYDIADPTLPNSPEISTVKRRPGLNSRYDSYYTKHSSQDTHMEGVDFGSLHDSDVHDKQDKKAYQGTKHRQNFQSYGTHFPGRNSSLDLYEDSTGEAAYKSTKNHRMETKRGVEGMRSDSASNHSDHYEENRAVKNADFLQYDNDNINPKNMQRSVHADFLQYDYDNIIPKNAQRSEHVKSKPSNSIRNSRVSLDTEERGLSTRMAKEEMFKGNKKAKKQYRDAGGAGMLANETTVAKRLKANTFQQYNMKQFPAAEIEPRKNQRSAAEMPSSFSEDETADTSSSMD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01935 546 SMART HOX_1 18 80 IPR001356 GO:0003677
Car02g01935 546 MobiDBLite consensus disorder prediction 432 459 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 360 383 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 7 27 - -
Car02g01935 546 Gene3D - 10 92 - -
Car02g01935 546 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Car02g01935 546 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 546 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 86 106 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 525 546 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 511 546 - -
Car02g01935 546 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Car02g01935 546 MobiDBLite consensus disorder prediction 1 27 - -
Car02g01935 546 CDD homeodomain 21 76 IPR001356 GO:0003677
Car02g01935 546 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 546 - -
Car02g01935 546 MobiDBLite consensus disorder prediction 78 114 - -
Car02g01935 546 Pfam Homeodomain 21 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01935 Car-Chr2 49709569 49714718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01935 3 546 Homeobox Transcription Factor Family AT4G03250 38.899 2.14e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car02g01935 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01935 - - gmx:100803515 782.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01935 02 49709569 49714718 Car02g01935 02 49709569 49714718 ECH
Car05g00839 05 45405222 45410578 Car02g01935 02 49709569 49714718 PCT