Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01905 ATGGCATTCACACTAGAGAGATGTGAAGATAATAATATGGTGTTCACAATGGAGTCTCAAAAATCAGTGCCTGCTCCATTCTTGATAAAGACATATCAACTTGTTGATGATCCTTTAACTGATCACATTGTATCTTGGGGTGATGATCAAACTACATTTGTTGTTTGGAGACCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGTTTTGTTAGACAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGGTGGGAATTTGCAAATGAATACTTCAAAAAAGGAGCAAAACATCTTTTATGTGAAATACATAGAAGAAAAACCCCTcaacactatcaacaacaatactatgaacaacaacaacaacaTTTTCAACAAGATGAAAGTATATGTTGGATTGATACATCATTACCATCTCCAAAATCATCAACAGGAACTGATATCTTAACAGCACTTTCTGAGGACAATCAAAGACTTAGGAGAAAGAATTTCATGCTTTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATTATATATTTTATTCAAAACCATGTGACCCCTGCAACACACTTTGAACAAAGGAGCAATAATAATAAGATTGTAGAATTGGATTCAGCAACTAAAATATCAACAAATGATGCTACTCATCAGTTTAAGGATTGTAATACTTCTGTGAAACTATTTGGTGTTCCTCTTTGTGGAAAAAAGAGATTGCATCCAGGTAATGttgattaa 774 0.3191 MAFTLERCEDNNMVFTMESQKSVPAPFLIKTYQLVDDPLTDHIVSWGDDQTTFVVWRPPEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQHYQQQYYEQQQQHFQQDESICWIDTSLPSPKSSTGTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVTPATHFEQRSNNNKIVELDSATKISTNDATHQFKDCNTSVKLFGVPLCGKKRLHPGNVD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01905 257 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
Car02g01905 257 Gene3D - 19 118 IPR036388 -
Car02g01905 257 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car02g01905 257 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 18 250 - -
Car02g01905 257 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 250 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01905 Car-Chr2 49331186 49332556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01905 21 202 HSF AT1G46264 62.019 4.70e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car02g01905 HSF_DNA-bind 1.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01905 K09419 - gmx:100776060 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01905 02 49331186 49332556 Car02g01905 02 49331186 49332556 ECH