Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01887 ATGTCAAGTGGAGCAACACACTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACATTATTTGTCCTTACTGTGACGAGGGATTTGTACAAGAACTTAATGAGGTGCGGGGTATAGCACCGCAAAATACCTTTCCGTCACGCTCGGGAGAGTTTAATCAAATGCCTGACTTATTTGATGCTCTACATGCTTTCGTGGGGCACAGAGGTTCCGAAAACAGGTTTGGGCTTATGGATGCTGTTGATAACTTCATGAGGCATAGAATGGCTGGCATGCACCCAAACTTTGATGTTAGAGGGAGGTCAAGTTCTGCCCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGACCATTTTTAGTATTTCACGGTCAAGTTCCTGGATTAACCTTGCCTAACGGCAGTCCAAGAGGTGGTCCAAGGCGCGGTGATTTCGGAGACTACTTTATTGGTTCTGGACTCGAAGAACTTATCGAACAACTCACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCACGGTCTTCGATCGATGCAATGCCTACTATTAGGATCACGCAGGCACATCTTCGCTTGGATTCACATTGTCCTGTCTGTAAAGAAAAATTCGAACTTGGTTCTGAAGCCAGAGAGATGCCGTGCGACCATATTTACCATTCTGAGTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTCGAGCTGCCACCACTAGGACAAATTAGTTCCCGTGGTAGTAGTCGAAGTTGGGGAGGAAGGAATGGCAGTAACAACAGCGGCAATGGTAGCTCGAGCGGCAGGGAGAGTGACCGTCAGAACCATGGAAGGAGAAATCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAGTAATCAATATTCTGAGACGGGTGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATAATGGATGGCACTTTGATAACTAA 999 0.4705 MSSGATHWCYECSRPIVLEGRDIICPYCDEGFVQELNEVRGIAPQNTFPSRSGEFNQMPDLFDALHAFVGHRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSAPVPEQSWGVYSSGPFLVFHGQVPGLTLPNGSPRGGPRRGDFGDYFIGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCRVELPPLGQISSRGSSRSWGGRNGSNNSGNGSSSGRESDRQNHGRRNPFSFLWPFRSSSSNSNQYSETGGSSSSTNADQNNGTSYNGWHFDN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01887 332 MobiDBLite consensus disorder prediction 251 277 - -
Car02g01887 332 SMART ring_2 200 240 IPR001841 -
Car02g01887 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Car02g01887 332 MobiDBLite consensus disorder prediction 251 332 - -
Car02g01887 332 Pfam Ring finger domain 199 241 IPR001841 -
Car02g01887 332 MobiDBLite consensus disorder prediction 292 332 - -
Car02g01887 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 315 - -
Car02g01887 332 PANTHER OS03G0351800 PROTEIN 1 315 - -
Car02g01887 332 CDD RING-H2_RNF126_like 200 241 - -
Car02g01887 332 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Car02g01887 332 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Car02g01887 332 SUPERFAMILY RING/U-box 180 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01887 Car-Chr2 49144703 49147616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01887 144 277 C3H Transcription Factor Family AT5G01980 40.441 6.21e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01887 K11982 - gmx:100813674 512.686