Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01885 ATGGAACAAGATAAAGTCAACGAGAGTGATACTAATGGATTGAAAAAAGGGCAATGGTCAACACAAGAGGATGAAATATTAGCAGCATATGTTAAAGAACATGGAGAAGGAAATTGGAATTTAGTTTCCAAGAATTGCGGACTTGCTCGATGTGGAAAAAGTTGTCGTTTTAGATGGTTGAATCATCTAAAATCAGATTTAAAAAGAGGTCCATTAAGTATTGAAGAAAAACAAAAAATCATTCGACTTTATGATACGTTGGGACCCAAATGGTCTAAAATGGCTATCGAGTTGCCTGGAAGAACAGATAATGAAATAAAGAATTTCTGGAATATAAGAAAAAGGAAACGTGAAAAAGAAGGCTTACCTCCATTGTATCATAGAAGCATAAAACATGAAGATGAAAACAACTCTAAATTTCAAGACTCATTCCATAATGTTCCAAATATGGTACAAAATAATGTGGACAATACTTCTATAAGCAATAATATTAGCCCAACATTGATTAAGAGGGGTGAGATTGAAATTCCTTATATGAAATTGGAGATGATATCAGAACTGCCTCCATTACCACCAAGTTTAGAAATTCAAAATTTTGAATATCCACTTTTTTCCAATACAATGTCTAATTATGAGTATACTACATATTCACCTCCAACACTTATGGAAACTCAATATGAGATGTCACAACCAATTTCTCCAAGAAGCAATGGTATGTTGGAATCCATATTCTATAATCCAAATATTTTGGAAGACTCTCAAATTAAATTGATTGATGAAGAAGGAAAGAATCCCATTTCTTTGGAGAAAGATGTTGAAGCAAACTATGGATTGTTGAAGAATGATACTAATAAGATTCCAAATGATATAAAGGATACCTTGTACGCAATTATTTATGGAAAAGGTATCCCAGGTTTCCCTTAG 924 0.3258 MEQDKVNESDTNGLKKGQWSTQEDEILAAYVKEHGEGNWNLVSKNCGLARCGKSCRFRWLNHLKSDLKRGPLSIEEKQKIIRLYDTLGPKWSKMAIELPGRTDNEIKNFWNIRKRKREKEGLPPLYHRSIKHEDENNSKFQDSFHNVPNMVQNNVDNTSISNNISPTLIKRGEIEIPYMKLEMISELPPLPPSLEIQNFEYPLFSNTMSNYEYTTYSPPTLMETQYEMSQPISPRSNGMLESIFYNPNILEDSQIKLIDEEGKNPISLEKDVEANYGLLKNDTNKIPNDIKDTLYAIIYGKGIPGFP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01885 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Car02g01885 307 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Car02g01885 307 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Car02g01885 307 SMART sant 68 116 IPR001005 -
Car02g01885 307 SMART sant 15 65 IPR001005 -
Car02g01885 307 Gene3D - 15 68 - -
Car02g01885 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Car02g01885 307 Gene3D - 71 142 - -
Car02g01885 307 ProSiteProfiles Myb-like domain profile. 64 111 IPR001005 -
Car02g01885 307 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 4 146 - -
Car02g01885 307 CDD SANT 75 111 IPR001005 -
Car02g01885 307 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 146 - -
Car02g01885 307 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Car02g01885 307 CDD SANT 19 63 IPR001005 -
Car02g01885 307 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01885 Car-Chr2 49127657 49130469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01885 13 152 MYB Transcription Factor Family AT2G32460 53.289 1.54e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g01885 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01885 K09422 - cam:101496052 626.32