Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01884 ATGAAAGCCATAGAGAAAAAGAAAAGTTTAGCATCAACTTGTCACGACTCTAGTAAAGTTTATGTTGAACCAAAGGGTCATGATGATGAAGGTTCACCAAGTGAAAAACCAACAAGTTCAATACTTCACAAGTGTGAGTTTTGTGACAAAACTTTTAGCTCCGGAAAAGCATTAGGTGGTCACAAAAGATTTCATCTTCAAGCTCTAAAGAAAGAGAAAGAGGATGATGCTAATATTAATATTAAAATAAAGGATAATGGTAAGTCTTCTTGTGATGATGGAAATAAAATATGTCATGTTTGTAAGAAGAATTTTCCATCCAAAAAAGCCCTATATGGTCACATGAGATCTCATCCTAATAGGGAATGGAGGGGTATTCACCCtaataaggataattataatattgattattatgatgatcatgatcaataTATTCTTTCTCAACCAAAAGAATTTGGTATTGATGATGAATCAAATTCTTGGCCGCCAAAATCGTTTAAAACCGATAAAAGAGGAAGAAAAGATATTCGTTGTAAAGAAGTTGTTAATGCTTGTCACATACTAATGTATATGTCTAGAGATACACGTTTGCATAGCAACCTCAATGAGAATTTGGATGATGAGGCTAAGGACGAAAAAGTGCTACCTAGTACTAGTGGTCTTATTGGTGACAACATTGGTGAAATCAACAATAGCAATAGCAAAAGAATGAAGTTGTTGGTGAAATTCAAGAATCCATGTTCAACATCTAAAGACAATATTTTGATGGAAAAAGATTGCTATCAACATGGTTCTTACGACGGTGAAGAGAAAAAGAGTAACATGCCTCATGAACAGATTAGAGAATCAAGTCAATCGATATCAAAAAATATTATAGGTTTTGATTTGAATGATGCACCAAATAATGTGGATGATGAAACAAACTAG 927 0.3225 MKAIEKKKSLASTCHDSSKVYVEPKGHDDEGSPSEKPTSSILHKCEFCDKTFSSGKALGGHKRFHLQALKKEKEDDANINIKIKDNGKSSCDDGNKICHVCKKNFPSKKALYGHMRSHPNREWRGIHPNKDNYNIDYYDDHDQYILSQPKEFGIDDESNSWPPKSFKTDKRGRKDIRCKEVVNACHILMYMSRDTRLHSNLNENLDDEAKDEKVLPSTSGLIGDNIGEINNSNSKRMKLLVKFKNPCSTSKDNILMEKDCYQHGSYDGEEKKSNMPHEQIRESSQSISKNIIGFDLNDAPNNVDDETN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01884 308 SUPERFAMILY beta-beta-alpha zinc fingers 43 118 IPR036236 -
Car02g01884 308 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 27 306 IPR044653 GO:0003700
Car02g01884 308 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 27 306 - -
Car02g01884 308 Pfam C2H2-type zinc finger 43 67 - -
Car02g01884 308 Pfam C2H2-type zinc finger 97 119 - -
Car02g01884 308 MobiDBLite consensus disorder prediction 20 34 - -
Car02g01884 308 MobiDBLite consensus disorder prediction 267 308 - -
Car02g01884 308 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Car02g01884 308 Gene3D Classic Zinc Finger 42 118 - -
Car02g01884 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 65 IPR013087 -
Car02g01884 308 MobiDBLite consensus disorder prediction 1 39 - -
Car02g01884 308 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Car02g01884 308 SMART c2h2final6 43 65 IPR013087 -
Car02g01884 308 SMART c2h2final6 96 118 IPR013087 -
Car02g01884 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01884 Car-Chr2 49125650 49126576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01884 37 137 C2H2 Transcription Factor Family AT2G26940 32.558 2.07e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01884 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01884 - - cam:105851665 560.066