Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01879 ATGAAAGCCATAGAGAAAAATAAAAGTTTAGCATCAACTTCTCACGACTCTAGTAAAGTTTATGTTGAACCAAAGGGTCATGATGATGAAGGTTCACCAAGTGAAAAACCAACAAGTTCAATACTTCACAAGTGTGAGTTTTGTGACAAAACTTTTAGCTCCGGAAAAGCATTAGGGGGTCACAAAAGATTTCATCTTCAAGCTCTAAAGAAAGAGAAAGAGAAAGAGGATGATGCTAATATTAATATTAAAATAAAGGATAATGGTAAGTCTTCTTGTGATGATGGAAATAAAATATGTCATGTTTGTAAGAAGAATTTTCCATCCAAAAAAGCCCTATATGGTCACATGAGATCTCATCCTAATAGGGAATGGAGGGGTATTCACCCTAataaggataattataatattgattattatgatgatcatgatcaatgtattattTCTCAATCAAAAGAATTTGGTATTGATGATGAATCAAATTCTTGGCCGCCAAAATCGTTTAAAACCGATAAAAGAGGAAGAAAAGATATTCGTTGCAAAGAAGTTGTTAACGCCTCTCACATACTAATGTATATGTCTAGAGATACACGTTTGCATAACAACCTCAATCAGAATTTGGATAATGAGGCTAAGGACAAAAAAGTGCTACCTAGTACTAGTGGTCTTATTGGTGACAACATTGGTGAAATCAACGACAACAATAGCAAAAGAATGAAGTTGTTGGTGAAATTCAAGAATCCATGTTCAACATCTAAAGACAATATTTTGATGGAAAAAGATTGCTATCAACATGGTTCAGAGAAAAATAGTAATAGGCCTCAAGATGAGATTGGGGAATCAAGTCGATCGGTATCAAGAAATATTCTAGATTTTGATTTGAATGATGCACCAAATAATGTGGGTGATGAAACAAACTAG 921 0.3246 MKAIEKNKSLASTSHDSSKVYVEPKGHDDEGSPSEKPTSSILHKCEFCDKTFSSGKALGGHKRFHLQALKKEKEKEDDANINIKIKDNGKSSCDDGNKICHVCKKNFPSKKALYGHMRSHPNREWRGIHPNKDNYNIDYYDDHDQCIISQSKEFGIDDESNSWPPKSFKTDKRGRKDIRCKEVVNASHILMYMSRDTRLHNNLNQNLDNEAKDKKVLPSTSGLIGDNIGEINDNNSKRMKLLVKFKNPCSTSKDNILMEKDCYQHGSEKNSNRPQDEIGESSRSVSRNILDFDLNDAPNNVGDETN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01879 306 Gene3D Classic Zinc Finger 40 120 - -
Car02g01879 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Car02g01879 306 MobiDBLite consensus disorder prediction 20 34 - -
Car02g01879 306 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 12 300 - -
Car02g01879 306 SUPERFAMILY beta-beta-alpha zinc fingers 43 120 IPR036236 -
Car02g01879 306 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Car02g01879 306 SMART c2h2final6 43 65 IPR013087 -
Car02g01879 306 SMART c2h2final6 98 120 IPR013087 -
Car02g01879 306 Pfam C2H2-type zinc finger 43 67 - -
Car02g01879 306 Pfam C2H2-type zinc finger 99 121 - -
Car02g01879 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 65 IPR013087 -
Car02g01879 306 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 12 300 IPR044653 GO:0003700
Car02g01879 306 MobiDBLite consensus disorder prediction 265 306 - -
Car02g01879 306 MobiDBLite consensus disorder prediction 1 39 - -
Car02g01879 306 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01879 Car-Chr2 49096564 49097484 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01879 43 139 C2H2 Transcription Factor Family AT2G26940 34.400 1.79e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01879 zf-C2H2_6 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01879 - - cam:105851665 487.648