Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01878 ATGGGAAACTTATGCATAAAACCAGTTGCTAATGTGTCTTCAACAAGTTTTGGAAGTACGAAGACTCAGAGCAAAACAAAACAGACTTCATCAAATTCTCCTACACGAAAAACCGTTTCGAAAACTTCACCATCAAATGTTGACAAATCCATTGCCAATGATGTTAAGTCCTTCACTTTCAATGATCTAAAAGAGGCCACTCGGAACTTTCGACATGAAAATTTAATCGGCGAAGGAGGGTTCGGATTCGTCTACAAAGGTTGGATAGATGAGAACACAGGTGCTCCTACAAAACCAGGAAATGGAATTGTAGTGGCAATTAAGAAGCTTAAACCAGAAAGTTTTCAAGGCCACAAGGAATGGCTTGCCGAAGTTAATTATCTAGGCCAACTTCACCATGAAAATTTGGTGAAGCTTATTGGTTATTGTTCAGAAGGTAAAAACAGGCTTCTGGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAGGTGTTCAACCGATTTCTTGGATTACAAGGATCAATATTGCGATCGGCGTTGCACGAGGACTAGCATTCTTACATTCTCTTGATGCAAATGTTATTTATCGCGATTTAAAGGCTTCCAACATCTTACTCGATTCGGATTTCAGTCCAAATCTTTCGGATTTCGGCTTGGCTAGAGATGGTCCGACCGGAGATAACACTCATGTTTCAACTAGAATTATCGGAACTCATGGCTATGCCGCCCCCGAGTATGTAGCTACAGGTCATTTAACAGCGAGGAGTGACGTATACAGCTTTGGTGTCGTCCTGTTAGAGTTACTAACAGGACGGCGTGTAGTTGAAGAGGATAGACCCGGATATTCGGACGAAACACTGGTGGATTGGGCAATGCCTTTTCTTAGTGACAGCAGAAGAATATTGAGAATCATGGATACTAAGTTGGGTGGTCAATACTCAAAGAAAGGAGCACAAGCTGCAGCTGCACTTGTTCTACAATGTCTTAATAATGATCCTAAACATAGACCTACTATGGTGAATGTTCTAGCTACATTGGAAGCACTAATTTCTTCAAGTTCATTCCCAAGGACCCCAAAAAATGATAACCATGCAACTAGGCATTCTAGTCATCATTCACATAAGTCAATTACTAGAAAACATTGA 1161 0.4031 MGNLCIKPVANVSSTSFGSTKTQSKTKQTSSNSPTRKTVSKTSPSNVDKSIANDVKSFTFNDLKEATRNFRHENLIGEGGFGFVYKGWIDENTGAPTKPGNGIVVAIKKLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSEGKNRLLVYEFMQKGSLENHLFRKGVQPISWITRINIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFSPNLSDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTARSDVYSFGVVLLELLTGRRVVEEDRPGYSDETLVDWAMPFLSDSRRILRIMDTKLGGQYSKKGAQAAAALVLQCLNNDPKHRPTMVNVLATLEALISSSSFPRTPKNDNHATRHSSHHSHKSITRKH 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01878 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Car02g01878 386 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Car02g01878 386 MobiDBLite consensus disorder prediction 359 386 - -
Car02g01878 386 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Car02g01878 386 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Car02g01878 386 SUPERFAMILY Protein kinase-like (PK-like) 38 351 IPR011009 -
Car02g01878 386 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g01878 386 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g01878 386 PANTHER OS01G0588500 PROTEIN-RELATED 17 377 - -
Car02g01878 386 MobiDBLite consensus disorder prediction 372 386 - -
Car02g01878 386 MobiDBLite consensus disorder prediction 14 46 - -
Car02g01878 386 CDD STKc_IRAK 76 354 - -
Car02g01878 386 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 377 - -
Car02g01878 386 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01878 Car-Chr2 49092675 49095060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01878 37 351 Glycoside Hydrolase AT3G07070 48.910 7.83e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car02g01878 PK_Tyr_Ser-Thr 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01878 - - gmx:102664409 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01878 02 49092675 49095060 Car02g01878 02 49092675 49095060 ECH