Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01869 ATGGCCAAAAAACGAAAGCTTCGATCCTccgaccccgaacctaccaaacaacccgaacccgaaccacaacaacaagacgtaatcgaacccgaaccAACATCAGACCAAAACGAAAACCACCAAAACATGGCCGTCGATGAAGAAATCGCTCCGATACAAGAAGATCAACCTCAAATCgaagaagaagcagaaccagaaggagaagaagaacaccaacagcaagaagaaaacgaaACCCTTGAAAACCAACAAAACGCAGGCGAAGTTTCGGAGCAGGTTGAAACAGTGGAAACTAACGGCGCTGATGATTCCAACAACAACGAAGAAGAAGAAGATCTCGATTTGGAAGAAGAGCCTGTTGAGAAGCTTCTGGAACCTTTCACGAAGGAGCAGTTACACGCTCTCGTGAAACAATCCATTGAGAAGTATCCAGATCTAGCGGAAAACGTTCGTCAGCTAGCTGATGTTGACCCTGCTCACCGGAAAATCTTCGTTCACGGCCTTGGCTGGGACGCCACCGCCGAAACCCTAACTACCGTGTTTTCGAAATACGGCGAAATCGAAGATTGCAAGGCTGTTACCGACAAATTATCTGGAAAATCTAAGGGCTATGCTTTTATATTGTTTAAGCATAGGACAGGTTGTCGTAGGGCACTGAAACAGCCACAGAAGAAGATCGGTAACCGAACAACATCGTGTCAGTTGGCATCTGCTGGACCTGTTCCGGCGCCTCCCCCGAATGGTCCTCCGGTCTCTGAATACACTCAAAGGAAGATATTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAGTTGCTTGAGTTTTTTAAGCAGTTTGGAGAGGTTGAAGATGGTCCATTGGGTATCGATAAGATGACTGGTAGGCCGAAGGGTTTCGCGCTTTTTGTATACAAAACTGTTGAGAGTGCAAAAAAGGCTTTGGAAGAGGCAAACAAGACTTTTGAGGGACACACTTTGTATTGTCAGAAAGCTGTTGATGGTCCTAAGGGATACAAAGGTTatcataaccagcaaccacagcatcaacaacatcattctcatcattctcaccactctcatcatcagcctcaCTACAATTCGAGAAAAGATAAGAACAAGTATTCCTCTGGTGGTGGGCCATCACATGGTGGTGCTGGTCACTTGATGGCTCCTCCAGGTCCTGCTGTTGGAGGTTACAATCCTGGAGTTCCGGCTCAGGGATTGAATCCAGCGCTTGGACAGGCGTTATCTGCTTTGCTTGCTAATCAAGGAGCTGGTTTGGGGCTTGGCAATTTGCTTGGAGGTCTTGGTGGTGCACCGGTGAATCAAGCTGGACCACCTCCTGCTGCATATGGTAATCAAGCTGCTATGGGATATGGGAACCAGCCGGGGTTGCAACCGCAGTATCAGAATCCTCAGATGGGGCAGAGCAGTGGTGTTAGACCTCACCCTGGTCCTGGCGCTCCTTATATGGGTCATTAG 1485 0.4141 MAKKRKLRSSDPEPTKQPEPEPQQQDVIEPEPTSDQNENHQNMAVDEEIAPIQEDQPQIEEEAEPEGEEEHQQQEENETLENQQNAGEVSEQVETVETNGADDSNNNEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQSIEKYPDLAENVRQLADVDPAHRKIFVHGLGWDATAETLTTVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRTGCRRALKQPQKKIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVEDGPLGIDKMTGRPKGFALFVYKTVESAKKALEEANKTFEGHTLYCQKAVDGPKGYKGYHNQQPQHQQHHSHHSHHSHHQPHYNSRKDKNKYSSGGGPSHGGAGHLMAPPGPAVGGYNPGVPAQGLNPALGQALSALLANQGAGLGLGNLLGGLGGAPVNQAGPPPAAYGNQAAMGYGNQPGLQPQYQNPQMGQSSGVRPHPGPGAPYMGH 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01869 494 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 481 - -
Car02g01869 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 481 - -
Car02g01869 494 SMART rrm1_1 162 234 IPR000504 GO:0003723
Car02g01869 494 SMART rrm1_1 258 330 IPR000504 GO:0003723
Car02g01869 494 SUPERFAMILY RNA-binding domain, RBD 241 352 IPR035979 GO:0003676
Car02g01869 494 MobiDBLite consensus disorder prediction 1 15 - -
Car02g01869 494 MobiDBLite consensus disorder prediction 337 394 - -
Car02g01869 494 Gene3D - 34 243 IPR012677 -
Car02g01869 494 Gene3D - 244 388 IPR012677 -
Car02g01869 494 MobiDBLite consensus disorder prediction 53 75 - -
Car02g01869 494 MobiDBLite consensus disorder prediction 103 117 - -
Car02g01869 494 MobiDBLite consensus disorder prediction 453 494 - -
Car02g01869 494 MobiDBLite consensus disorder prediction 1 117 - -
Car02g01869 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Car02g01869 494 MobiDBLite consensus disorder prediction 78 102 - -
Car02g01869 494 MobiDBLite consensus disorder prediction 460 479 - -
Car02g01869 494 SUPERFAMILY RNA-binding domain, RBD 151 244 IPR035979 GO:0003676
Car02g01869 494 MobiDBLite consensus disorder prediction 349 368 - -
Car02g01869 494 CDD RRM_RBM24_RBM38_like 257 332 - -
Car02g01869 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 230 IPR000504 GO:0003723
Car02g01869 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Car02g01869 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 334 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01869 Car-Chr2 48997353 49002239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01869 253 336 C2H2 Transcription Factor Family AT2G19380 32.143 1.25e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01869 K12741 - gmx:100783742 567.385