Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01852 ATGGATGTTCATGTGATAAACGTGGGAGAAGGAAGTGGTCATCGAGGTATGGAAAATGGTGGGGATGTTGAACTTGGTGAAGGCGAAGTTAGTAATGCTGGAAACTCGGGATCTCATGTTGAGGatatggtttttgagccatatttgggtatggaatttgattctgaagattcggcaaaaactttttatagtgagtatgccagacgttcgggtttcagcTCCAAAGCTGGCTTGCACGGTCAGTTTAATGCTGATGGGACAAATATGTTTCGGGAATTCGTGTGTAGCAGGGAAGGTTTAAAAAGAAAGATGACTGAAAgttgcggtgcgatgattagaatagaacaaaagggtcaaaataagtgggttgttgcaaaatttgtgaaggaacataaccattccatggcggttcctgataaggtggataaacttcgaccacaGAAGCATTTTTCTAGTGTTGGAAGAACTATGCCTGAAACTTACAAAGGAGTGGGGCTTGTTCCCAGTGGTGTCATGTATATATCTATCGATGGGAATCACGTTTCCTCCGAGAATAGTCAGAAAAGTAGGAATTATCCTGCAGCTGCTGCTGCCAAAACGAGTCATCTGGTTAAAAATGCTACATCGATGACATATACTGTAAGGCAGCCTAATcaaaagaggacattaggaaaggatgctgagaacctgctggagtattttaagaaagtgcaggctgaaaaccctggtttcttctatgcaatacaacttgatgaagataatcgtatgtcaaatgtgttttgggcagatgcaagatcaaggacagcttacagtcattttggtgatgctgttaccctggaaacagcatatagagcaaatcaatataatgtgccgtttgctccattcactgggataaatcatcacggtcagatgattttgtttggctgtggactcatttttgatgactctgaggcttcttttggttggctctgtaagacatttctggcagcgatgaacgaccgtcaccctatctctattactactgatcagaacagatccatacaaacagcagtttcacaggtttttcctcaagcacgccactgtataaataagcggcatgtcttgcgtgaaggccacaaaaagttggaccatgtatgccgcatgtatccaaattttcagtgtgaactttataattgtattaacctgacagaaacaactgaggagtttgatttgtcttggaattctatcatcgataaatatcaaatcagagggcatgattggcttcagtccttgtatagtactcgtgctcaatgggttccagcatattttcgtgattcatttttcgctgtaatatctccttatcaaggattcaatggttctttttttgacggttttgtcaaccagtatacgacattaccaatgttctttaggcagtatgaactagctctggagagatggtttgaaaaggaaatagaattagattttgagacaatttgtactgcaccagttctaaagacaccctcaccaatggagaatcaggttgctaagctttatacgcggaaaatatttttgaagtttcaagaagagctagttgaaacttttgcgtacacagccaacagaatcgaagaggatggggaaaatagcatatttagtgttgcaaaatttgaggatgaccaaaagttgtatactgttacattaaagcagtccgaattgagagctaactgtagttgccagatgtttgagtattcaggaattctttgtaggcatgttttaactgttttcatggtgtctaatgtttttactataccatcccactacatcttaaaacggtggacaagggatgcaaaaagcagtgttgtgttggatgactgtgctggtgaatcacatggacacgagtctttgacatcacgatataccaatctatgccgggaagccattagatacgccgaggaaggggcagtagctgtggaaacttatgatgctgcaatgggtgttcttagagaaggtggaaagaaaattgctgtcacgaagagaagtattgccaaagttgcaccacctaatcaacaagtcagcGGGAATACTTGCACTGACAAGAAAACCCCTACTTCAACATCAGATACAACTCCTCTGTTATGGCCACTTAACGATGAAACAACAGGGTTTAATCTTAATGATGTCGGTGCTCCTGTCCTACCAGTTGCTGATCTGAATTTACCACAAACAACCCCACCGCCTCATAAGCGAGTTGATGTTGCTGCCCCAGTGTCTCGACAGCGAGTTGATGGTCCATCCCCAGTGCCTCGTAAGCGAGTTGATGGTCCACGCTCAGTGCCTCGTAAGCGTGTTGATGGTCCATCCGCAATGTCTCGTCAGCGAGATGATGGCCCACCCCCAGTGCCTCTTCAGCAAGACGATGGTCCACCTGAAAACACGGTGGTTTTTCCATGTCTGAAGTCAATGACATGGGTAATGGAGAACAAAACCTCAACGCCAGGGAATAGAGTAGCCGTTATTAATCTTAAGTTGCAAGATTATAGCAAGAATCCATCAGCAGAATATGAGGTCAAGTTTCATCTCTCGCGAGTTAATGTGGAACCTGTTTTAAAGTCTATGGCTGAAGTTAGCGAACAACTTTCAACAACATCTAGTAAGGTTGCTGTAATAAATCTCAAGCATGAGGATGCCCAGACTTCTGGTGAATCTGAAGTTAAGTTTCAAGTGTCCAGGGATGCATTAGGTGCTGTGCTACGATCAATGGCTTATATCCGCGAGCAACTTTCTTGTGCTGGCGATGCGCACTCCGAACCTGTGTCGAAAAAGCTTCGAAACTAA 2811 0.1928 MDVHVINVGEGSGHRGMENGGDVELGEGEVSNAGNSGSHVEDMVFEPYLGMEFDSEDSAKTFYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRKMTESCGAMIRIEQKGQNKWVVAKFVKEHNHSMAVPDKVDKLRPQKHFSSVGRTMPETYKGVGLVPSGVMYISIDGNHVSSENSQKSRNYPAAAAAKTSHLVKNATSMTYTVRQPNQKRTLGKDAENLLEYFKKVQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSHFGDAVTLETAYRANQYNVPFAPFTGINHHGQMILFGCGLIFDDSEASFGWLCKTFLAAMNDRHPISITTDQNRSIQTAVSQVFPQARHCINKRHVLREGHKKLDHVCRMYPNFQCELYNCINLTETTEEFDLSWNSIIDKYQIRGHDWLQSLYSTRAQWVPAYFRDSFFAVISPYQGFNGSFFDGFVNQYTTLPMFFRQYELALERWFEKEIELDFETICTAPVLKTPSPMENQVAKLYTRKIFLKFQEELVETFAYTANRIEEDGENSIFSVAKFEDDQKLYTVTLKQSELRANCSCQMFEYSGILCRHVLTVFMVSNVFTIPSHYILKRWTRDAKSSVVLDDCAGESHGHESLTSRYTNLCREAIRYAEEGAVAVETYDAAMGVLREGGKKIAVTKRSIAKVAPPNQQVSGNTCTDKKTPTSTSDTTPLLWPLNDETTGFNLNDVGAPVLPVADLNLPQTTPPPHKRVDVAAPVSRQRVDGPSPVPRKRVDGPRSVPRKRVDGPSAMSRQRDDGPPPVPLQQDDGPPENTVVFPCLKSMTWVMENKTSTPGNRVAVINLKLQDYSKNPSAEYEVKFHLSRVNVEPVLKSMAEVSEQLSTTSSKVAVINLKHEDAQTSGESEVKFQVSRDALGAVLRSMAYIREQLSCAGDAHSEPVSKKLRN 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01852 936 MobiDBLite consensus disorder prediction 756 772 - -
Car02g01852 936 Pfam MULE transposase domain 277 368 IPR018289 -
Car02g01852 936 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 791 862 IPR031052 GO:0006355
Car02g01852 936 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 736 IPR031052 GO:0006355
Car02g01852 936 Pfam FAR1 DNA-binding domain 61 135 IPR004330 -
Car02g01852 936 MobiDBLite consensus disorder prediction 679 705 - -
Car02g01852 936 Pfam SWIM zinc finger 555 587 IPR007527 GO:0008270
Car02g01852 936 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 791 862 - -
Car02g01852 936 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 40 736 - -
Car02g01852 936 MobiDBLite consensus disorder prediction 728 805 - -
Car02g01852 936 SMART 26again6 566 593 IPR006564 GO:0008270
Car02g01852 936 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01852 Car-Chr2 48818864 48823927 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Car02g01852 MULE 7.3e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01852 - - gmx:100786516 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01793 05 63050568 63057800 Car02g01852 02 48818864 48823927 PCT