Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01817 ATGGatcatcatcatcatcctatgaatatcatgaacatTAATATGGATACAACTAATAGGAAGTTTCATTCTTTTCCTCTCACCACCAACAACTCTTCTCTTCAACAACATCATCATAACTATAACAACACTGCTAATGTTGTTGTTAGAGATAAAATCATGGCTCATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGTTTGAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAATCATGTGCAAAATGTGAAACATTGAATGGATCAGGAAGGACAGGAAGTAGTTGTTTAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAAGCTTATTGTGAGATGCTTATTAAGTATGAGCAAGAACTCACTAAACCCTTCAAAGAAGCCATGCTTTTCCTCTCAAGAATTGAGTCTCAGCTTAAGGCTCTTGCTGTTTCAACTGACTTTGGTCAAAGTGAATCACCTTCACATAATGAGATTGATATGCATGAAAACAACCTAGATACACAAGCTGAAGATCAAGAATTGAAAGTGCAACTATTGCGCAAGTATAGTGGATATTTAGGAAGCCTCAAGAAAGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTAGGCAACAACTACTAGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCCCAAAAGCAAGCACTTGCAGAATCTACAGGACTAGATTTGAAGCAAATAAACAATTGGTTCATAAATCAGAGAAAACGTCACTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACAAATTACTATATGGAAAATGTCATGTGCAAGCCTTTTCCCATGGATGCCATGCCTATGCTTCTTTAG 891 0.376 MDHHHHPMNIMNINMDTTNRKFHSFPLTTNNSSLQQHHHNYNNTANVVVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCETLNGSGRTGSSCLGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLSRIESQLKALAVSTDFGQSESPSHNEIDMHENNLDTQAEDQELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDAMPMLL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01817 296 ProSiteProfiles ELK domain profile. 180 200 IPR005539 GO:0003677
Car02g01817 296 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 8 287 - -
Car02g01817 296 SMART KNOX1_2 47 91 IPR005540 GO:0003677|GO:0005634
Car02g01817 296 Pfam KNOX1 domain 49 90 IPR005540 GO:0003677|GO:0005634
Car02g01817 296 SMART HOX_1 202 267 IPR001356 GO:0003677
Car02g01817 296 SMART KNOX2_2 99 150 IPR005541 GO:0003677|GO:0005634
Car02g01817 296 SMART ELK_2 180 201 IPR005539 GO:0003677
Car02g01817 296 CDD homeodomain 212 264 IPR001356 GO:0003677
Car02g01817 296 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 287 - -
Car02g01817 296 ProSitePatterns 'Homeobox' domain signature. 238 261 IPR017970 GO:0000981|GO:0006355
Car02g01817 296 Pfam ELK domain 180 201 IPR005539 GO:0003677
Car02g01817 296 Pfam Homeobox KN domain 220 259 IPR008422 GO:0003677|GO:0006355
Car02g01817 296 Gene3D - 198 271 - -
Car02g01817 296 Pfam KNOX2 domain 103 148 IPR005541 GO:0003677|GO:0005634
Car02g01817 296 ProSiteProfiles 'Homeobox' domain profile. 200 263 IPR001356 GO:0003677
Car02g01817 296 SUPERFAMILY Homeodomain-like 202 274 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01817 Car-Chr2 48309814 48314253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01817 49 290 Homeobox Transcription Factor Family AT1G62360 68.093 2.12e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Car02g01817 KNOX2 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01817 - - cam:101495840 577.4