Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car02g01797 | atgttctgcaatccgcaatcagcaacactgattGAAACTTGTGTTGTGGGGCATATTTCTTGTTCGAAATATGTGTTGCAGTATTTTCTTAAGACAGGAACATGCAAATATGGATCGACATGTAAATATCATCACCCTAAGGACAGGCGAGGTGCTGCACCCGTGATATTTAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCGTGTAAGTTTGGAGTTGCGTGCAAGTTTCATCATCCACAGCAGCAAGCTTCGTTTGGAGCTTATCCGGTGGCTGGATCCCCTCCCTCAACAACTATTACTTCATCAGGTTTTCCATATGCTGGTGGATTTCCTGCATGGTCAGTGCCGAGAATGTCGTCGTATTTATCTGGACAGGGCATTCAATCTTATGTTCCTCCTTTTCTGCCTTCTTCACAAGGCATTATGCCTGCACTGAGCTGGAGCAACTACATGGGAAGTATGAGCCCTGCAATTCCTACTAGTTTTCTTGGATCGAATCTTGTCTATGACTACATGAATCCGGGAGAGACACTTTCCGGGGGGCAGGTCATGAGTTCAACTCTCCCGGATAGACCCGATCAACCAGAATGTAAATACTTTATGAGCACTGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGGCCAATCATTATTAGTTAATCCACTTGGCCTTCCTATGAGACCAGGAAATGCTATATGCTCTTATTACAGACTCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGGCCATTCCTCAGAACTACGGCTTGCCCTCGCCTGCTATATCGGTATTCGACGCATCTCTCCTTAATAGTCCAAGAAGGGTTTCAACTGTCCAACCAACTGAGACACCTCCGTCTAAACTATCAAGTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACCGAAGATTCGTCTAAACAAGGTGACGACACTGCATCAAATTCTCGCACACCTTCGTCCGAGTCGTTACAGGAATGA | 1062 | 0.4303 | MFCNPQSATLIETCVVGHISCSKYVLQYFLKTGTCKYGSTCKYHHPKDRRGAAPVIFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGAYPVAGSPPSTTITSSGFPYAGGFPAWSVPRMSSYLSGQGIQSYVPPFLPSSQGIMPALSWSNYMGSMSPAIPTSFLGSNLVYDYMNPGETLSGGQVMSSTLPDRPDQPECKYFMSTGTCKYGSDCKFHHPKERIGQSLLVNPLGLPMRPGNAICSYYRLYGVCKFGPTCKFDHPVLAIPQNYGLPSPAISVFDASLLNSPRRVSTVQPTETPPSKLSSDKLQQSDTKAATEDSSKQGDDTASNSRTPSSESLQE | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car02g01797 | 353 | Gene3D | - | 196 | 276 | - | - | |
Car02g01797 | 353 | SUPERFAMILY | CCCH zinc finger | 207 | 232 | IPR036855 | GO:0046872 | |
Car02g01797 | 353 | SUPERFAMILY | CCCH zinc finger | 27 | 49 | IPR036855 | GO:0046872 | |
Car02g01797 | 353 | Gene3D | - | 21 | 102 | - | - | |
Car02g01797 | 353 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 26 | 337 | - | - | |
Car02g01797 | 353 | MobiDBLite | consensus disorder prediction | 301 | 353 | - | - | |
Car02g01797 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 247 | 275 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | SUPERFAMILY | CCCH zinc finger | 248 | 274 | IPR036855 | GO:0046872 | |
Car02g01797 | 353 | SMART | c3hfinal6 | 203 | 230 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | SMART | c3hfinal6 | 23 | 47 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | SMART | c3hfinal6 | 67 | 92 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | SMART | c3hfinal6 | 247 | 274 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 27 | 47 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 251 | 273 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 205 | 230 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 69 | 92 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 65 | 93 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 203 | 231 | IPR000571 | GO:0046872 | |
Car02g01797 | 353 | SUPERFAMILY | CCCH zinc finger | 64 | 94 | IPR036855 | GO:0046872 | |
Car02g01797 | 353 | PANTHER | PROTEIN PHOSPHATASE RELATED | 26 | 337 | - | - | |
Car02g01797 | 353 | ProSiteProfiles | Zinc finger C3H1-type profile. | 20 | 48 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car02g01797 | Car-Chr2 | 47992602 | 47997181 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car02g01797 | 27 | 340 | C3H Transcription Factor Family | AT1G04990 | 43.902 | 2.99e-75 | 236 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Car02g01797 | zf-CCCH | 8.1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car02g01797 | - | - | vra:106765262 | 522.702 |