Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01797 atgttctgcaatccgcaatcagcaacactgattGAAACTTGTGTTGTGGGGCATATTTCTTGTTCGAAATATGTGTTGCAGTATTTTCTTAAGACAGGAACATGCAAATATGGATCGACATGTAAATATCATCACCCTAAGGACAGGCGAGGTGCTGCACCCGTGATATTTAATACTTTAGGTCTTCCCATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCGTGTAAGTTTGGAGTTGCGTGCAAGTTTCATCATCCACAGCAGCAAGCTTCGTTTGGAGCTTATCCGGTGGCTGGATCCCCTCCCTCAACAACTATTACTTCATCAGGTTTTCCATATGCTGGTGGATTTCCTGCATGGTCAGTGCCGAGAATGTCGTCGTATTTATCTGGACAGGGCATTCAATCTTATGTTCCTCCTTTTCTGCCTTCTTCACAAGGCATTATGCCTGCACTGAGCTGGAGCAACTACATGGGAAGTATGAGCCCTGCAATTCCTACTAGTTTTCTTGGATCGAATCTTGTCTATGACTACATGAATCCGGGAGAGACACTTTCCGGGGGGCAGGTCATGAGTTCAACTCTCCCGGATAGACCCGATCAACCAGAATGTAAATACTTTATGAGCACTGGAACATGCAAATATGGATCTGATTGCAAGTTCCACCACCCTAAAGAAAGAATAGGCCAATCATTATTAGTTAATCCACTTGGCCTTCCTATGAGACCAGGAAATGCTATATGCTCTTATTACAGACTCTATGGAGTATGCAAGTTTGGTCCAACATGCAAATTTGATCATCCAGTTTTGGCCATTCCTCAGAACTACGGCTTGCCCTCGCCTGCTATATCGGTATTCGACGCATCTCTCCTTAATAGTCCAAGAAGGGTTTCAACTGTCCAACCAACTGAGACACCTCCGTCTAAACTATCAAGTGACAAGCTTCAACAATCTGATACAAAAGCTGCTACCGAAGATTCGTCTAAACAAGGTGACGACACTGCATCAAATTCTCGCACACCTTCGTCCGAGTCGTTACAGGAATGA 1062 0.4303 MFCNPQSATLIETCVVGHISCSKYVLQYFLKTGTCKYGSTCKYHHPKDRRGAAPVIFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQQQASFGAYPVAGSPPSTTITSSGFPYAGGFPAWSVPRMSSYLSGQGIQSYVPPFLPSSQGIMPALSWSNYMGSMSPAIPTSFLGSNLVYDYMNPGETLSGGQVMSSTLPDRPDQPECKYFMSTGTCKYGSDCKFHHPKERIGQSLLVNPLGLPMRPGNAICSYYRLYGVCKFGPTCKFDHPVLAIPQNYGLPSPAISVFDASLLNSPRRVSTVQPTETPPSKLSSDKLQQSDTKAATEDSSKQGDDTASNSRTPSSESLQE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01797 353 Gene3D - 196 276 - -
Car02g01797 353 SUPERFAMILY CCCH zinc finger 207 232 IPR036855 GO:0046872
Car02g01797 353 SUPERFAMILY CCCH zinc finger 27 49 IPR036855 GO:0046872
Car02g01797 353 Gene3D - 21 102 - -
Car02g01797 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 26 337 - -
Car02g01797 353 MobiDBLite consensus disorder prediction 301 353 - -
Car02g01797 353 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Car02g01797 353 SUPERFAMILY CCCH zinc finger 248 274 IPR036855 GO:0046872
Car02g01797 353 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Car02g01797 353 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Car02g01797 353 SMART c3hfinal6 67 92 IPR000571 GO:0046872
Car02g01797 353 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Car02g01797 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 27 47 IPR000571 GO:0046872
Car02g01797 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 273 IPR000571 GO:0046872
Car02g01797 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 230 IPR000571 GO:0046872
Car02g01797 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 69 92 IPR000571 GO:0046872
Car02g01797 353 ProSiteProfiles Zinc finger C3H1-type profile. 65 93 IPR000571 GO:0046872
Car02g01797 353 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Car02g01797 353 SUPERFAMILY CCCH zinc finger 64 94 IPR036855 GO:0046872
Car02g01797 353 PANTHER PROTEIN PHOSPHATASE RELATED 26 337 - -
Car02g01797 353 ProSiteProfiles Zinc finger C3H1-type profile. 20 48 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01797 Car-Chr2 47992602 47997181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01797 27 340 C3H Transcription Factor Family AT1G04990 43.902 2.99e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car02g01797 zf-CCCH 8.1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01797 - - vra:106765262 522.702