Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01795 ATGGAAAATTCGGACCACGACGAACCCGACAAGAAGAGGCCTCATCTTCTCACCTCTGTCTCTTCTCGCATCACACGAAACTCAACCAATTCTTCTCCTAACAGCAAAAACGCTGATGCAGGTGTCTTGCAACTCCAGAATCAGCAACTTGTTCAGCAGACAGAAATCCAGAAACATGCTTTACATGATCTCGAAGAAAAAACTAGAGAATTAAAAGAAAGACAAAATTCTTATGATGATTCATTAATTGAATTCAACCAACACTGGGATCAGTTGGTCGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAGGCAAAGACTCTTTGCAAACTTTGGCTTACCTTGATAATCCTCAAGATTCCCTTCCTTCGTGTCCTCCGGACGATCTATTTCTTTGTAGATTAATCCAGAAAGATTCTATTGAAGGAAGCAGTAATGATGAGATAATTAATTATGTTGAGGAAGCCCTTGCTTTGCGTCTGTTATCTACTACGGAGTTGTTGAAACATATTCAAGATACCATTGATGATCAAATGAAAAGATTTGAGGATATAGCTCAGGTTTTACATGGAGATTTATCTGCGGAAGATGTTATCATCTTAACGTCTAAGATTGATGATATGGCGAAAAAGGAGGCAGACAATTTTCGTGAAGTGATTGATACTCTCCACATAAAACATGAAGAGTATACTGTTGGTATTCAAAATTATATAAACGAGTGCTTACGAGATCAATCTGACATAAAACGTCTTACAGGAGAGCTTGACGAGATCGTGGCTGAGCTCGAAGAGAGTAGAAGAAAACTAGTCAATCTGAAAATGCAAAAGGATGCAGCTGTGGGAATGAATTCCTCCAATGCCGATGCAGTGAATGGAAACTTGTCTCCTGAGAAGCCTGCAAACAAGGCCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCCAAGGTAGTGAATGCTGATCGTCTCTCTGAGCTTCAAGATGCACGGGAAGAAAATCAAATCTTGACAAAGCAATTCCAAGAACTTCAGAATGAACTGATTGATGATAAGTATGTACGCTCTGCCCGAATATACTCTTTAGCAGATGATCAACTTCAACATTGGATCGCTGAATTGGATCGATACAAATCATTGACAGAGTCTCTGCAGGCTGGTAGGGCTAATGTCACAAAATGGGAGAAGGAACTGAATATGAAATTGGAGTCTGCTGATAATGCAAGGCGCATCCTTGACAACTCTGACTCTAGGGCTGATGAGCTCGAGCTTCAATTGCAGAAGTGTATTATAGAAAGGAATGATCTTGAAATTAAGATGGAAGAGGCCAAACAGGACACTGGGAGAAAAGATATCAAAGCCGAGTTTCGTGTGATGGCTTCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCGCAGTTGAAGCGATGGAAGGATGCAGCTGTTGAAGCTGTATCATTGCGTGAGAAATCACATTCACTAAGAGCAAAATTGAGTGGGAAGACAAGCGAACTCAAGAGCCTCGTAAACAAATGTGCTGAACAGGTTTTGGAAATAAAGTCTTCAAAAGCATTGATTGAAAAGTTACAGCAGTCGAATCAGGAGTTAGAATTTGTTCTGGATATGTATGGTCCGGAGGATTATGCGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAGTAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTTAAAGCCGCAGAAGCTGAAATAGAGGACTTAAGGGCCAAGCTGGATGCAACTGAAAGAAACAAGTTGGAGCTGAGTGAGGCTGTTAAAGTTAAAGAGGCTGAGGCAGAGGCCTATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAACACCAACATCTGTTACAGCAGGTGGCTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAACGCTTTACTGTCTGAAAAGCAAACCTTAGCTGATCAACTTCAACAGCTTAATTCTTTGATAGAAAAATCAAAGACGAGGATTGCAAGTAGTGAAGAGCAGATCGAATGTATTCTATCAGAAGCCGCTAAATGTACTCAAGATGAAAAGCGCGTTGCAGCTGCCTTAGAGTTTGCCAGGTGGGAATTGGCTGATGCTGAGAAGGAGTTTAAGTTGCTCAAGTCTGCTGCTTCATCTTCAGAGAAAGAATACGACCAAATTCAGAAAGATATAGAAGCTATTGAAAAGGAATTGGATAGCGAAAGGAGTTCACGGAGGAAGCTTGAGGAAGAATTAATGGAAGTAAACAATCAAATTGCTGAGCTGAATTCTGAAGCCGGAGAAACTGCAGTACAGAAGCTTGAAGAGGAAATAAGAGTTTGCAAGAACATGATCAAATGCACTGTTTGTTCTGACCGTCCAAAGGAGGTGGTGATTGTGAAGTGCTATCATCTATTCTGCAATCCATGTATACAAAGAAATCTTGAACTCCGTCACCGCAAATGTCCTGCGTGTGGAACTGCATTTGGACAGAGTGATGTTCGCTTTGTTAAAATATGA 2643 0.409 MENSDHDEPDKKRPHLLTSVSSRITRNSTNSSPNSKNADAGVLQLQNQQLVQQTEIQKHALHDLEEKTRELKERQNSYDDSLIEFNQHWDQLVDDMALLGIQAGRGKDSLQTLAYLDNPQDSLPSCPPDDLFLCRLIQKDSIEGSSNDEIINYVEEALALRLLSTTELLKHIQDTIDDQMKRFEDIAQVLHGDLSAEDVIILTSKIDDMAKKEADNFREVIDTLHIKHEEYTVGIQNYINECLRDQSDIKRLTGELDEIVAELEESRRKLVNLKMQKDAAVGMNSSNADAVNGNLSPEKPANKAMGLRELKDSIEEAKVVNADRLSELQDAREENQILTKQFQELQNELIDDKYVRSARIYSLADDQLQHWIAELDRYKSLTESLQAGRANVTKWEKELNMKLESADNARRILDNSDSRADELELQLQKCIIERNDLEIKMEEAKQDTGRKDIKAEFRVMASALSKEMGMMEAQLKRWKDAAVEAVSLREKSHSLRAKLSGKTSELKSLVNKCAEQVLEIKSSKALIEKLQQSNQELEFVLDMYGPEDYAKSLPEVRESESKARSQAEMLKNALDEHGLELRVRAANEAEAACEQRLKAAEAEIEDLRAKLDATERNKLELSEAVKVKEAEAEAYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHNALLSEKQTLADQLQQLNSLIEKSKTRIASSEEQIECILSEAAKCTQDEKRVAAALEFARWELADAEKEFKLLKSAASSSEKEYDQIQKDIEAIEKELDSERSSRRKLEEELMEVNNQIAELNSEAGETAVQKLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01795 880 PANTHER RING FINGER PROTEIN-RELATED 12 880 IPR013956 GO:0004842|GO:0010390
Car02g01795 880 Coils Coil 249 276 - -
Car02g01795 880 Coils Coil 47 81 - -
Car02g01795 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Car02g01795 880 SUPERFAMILY RING/U-box 827 871 - -
Car02g01795 880 MobiDBLite consensus disorder prediction 1 38 - -
Car02g01795 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 12 880 - -
Car02g01795 880 MobiDBLite consensus disorder prediction 18 38 - -
Car02g01795 880 CDD RING-HC_BRE1_like 826 867 - -
Car02g01795 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Car02g01795 880 Coils Coil 681 722 - -
Car02g01795 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Car02g01795 880 Coils Coil 583 631 - -
Car02g01795 880 Coils Coil 406 447 - -
Car02g01795 880 Coils Coil 314 348 - -
Car02g01795 880 MobiDBLite consensus disorder prediction 1 17 - -
Car02g01795 880 SMART ring_2 828 866 IPR001841 -
Car02g01795 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Car02g01795 880 Coils Coil 737 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01795 Car-Chr2 47960213 47972647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01795 828 875 RAD5 or RAD16-like Gene Family AT5G05130 35.417 6.68e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01795 K10696 - gmx:100796610 1277.31