LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car02g01785	ATGCAAATCTCTCTCACAAATTCCCCTTTCAAACCCCCTAAATTCTTTCCATTTCACAACCCCATTTTCTCACCAAAACAACCCAACCACCATATTTCGTTGCAAGTCGTCAATTCCATTAAAGGTTCATCAGGTTATTTATCCGAAATCAGCAAAGCAATCGATTACGAGGAACAGTACCGTGTGGCACGCTCACAGGTTAACCGTAAAGGTTTGGTGGACTTGGAAGGTTATTCCATTGAAGGAGTTTCGATTGGTGGACATGAGACGTGTATTGTAATTCCTGAATTTAAGTGTGCTTTTGATATTGGAAGGTGCCCAACTAGAGCTATTCATCAAAATTTTGTTTTTATCACTCATGCTCATCTTGATCACATTGGTGGGCTGCCAATGTATATAGGAAGCCGTGGTTTGTATAATTTAAAACCTCCCACGGTATTTGTACCTCCTTGCATCAAAGACGACGTTGAGAAGTTGCTCGATGTTCACAAGAAATTGGGCCAAGTTGAACTCAACGTTGAATTGGTTGCTCTAGATATCGGGGAGACATATGAACTACGGAATGACCTTGTTGTTCGACCATTCAAAACACAACATGTTATACCAAGCCAGGGTTATATAATCTACTCAATTAGGAAAAAGCTGAGGAAACAATACAGTCACTTGAACGGGAAACAAATTGAGAAATTAAAAAAGTCAGGCGTTGAGATTACAGACACTATATTATCGCCTGAGGTGGCCTTCACTGGGGATACAACAGCAGATTTTATGCTTGACCCACTTAATGCTGATGCATTGAGAGCAAAAGTTCTTATAACCGAGGCAACTTTTCTAGATGATTCCACCAGCATAGATCACGCACGCCAACATGGTCATACACATATATTTGAGCTCATTGAAAATGCTCAGTGGATTCGCAACAAAGCAGTTCTGTTGACTCATTTTTCATCAAGATACAATATAGAGATACAGTTGAGTGTTACAATAGTTTTCGTACAACCACAAGATCTATCTATTGTTTCTCGATCTGGGTCTGAGGGAAATTGGCGTTTTGTTACGATTATGAGGAAAAGAGAGAGGGAAAACCCTTGTGGGGTATGTGGGCATTATCACAAATATGAAGAAGGTGAAGTTTGTTCGATTTGTGGTCATAGGATTGCTGTTGGATCGGAGAAAACTTCGATACAAGTTAGTGCCTTTCCTTCTGTGATCTTGCCGGAGTTTCTTTACTTGGGAAGCTATGATAACGCATCACGCTCTGAGCTTCTCAAAACTCAAGGGATTTCACGTATCCTCAATACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCTGATGACAAAAGTTTTCCGTTTGATGAAGCAAACCAGTTTCTAGAACAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGCAGGTCCCCGGCTATTGTGATTGGCTACCTGATGAAGTCGAGAGGATGGAGACTTGCACAGAGTTTTATGTGGGTAAAGGAACGCAGAACTTCGGTTGAATTATCTGAAGGTGCCTTCCAACAACTGCAGGAGTACGAGAAAAATCTATTCGCTTCAGCTGGCGGCCCTCTTCTGTCTCCTTTCTCACATGCAGCCGGGCCGTCTTCAATTAGCTTTGGCTTCCCAAAGACCAATGACCTAGCTCCACTTCCTGCCTTCAGCTGCGCCTCAACTCCTTCAATTTTTGCCCGAGCACCCCTCGACGTAGCTCCTACTGAGTTTACATTCGGGGCCAGCCAGAGTGTCACCGGAAATCCTTTCAATACAACAAATCCACCAAATCCTAATGTTACCGATATTCAAATGGATGGATCTTGA	1872	0.4247	MQISLTNSPFKPPKFFPFHNPIFSPKQPNHHISLQVVNSIKGSSGYLSEISKAIDYEEQYRVARSQVNRKGLVDLEGYSIEGVSIGGHETCIVIPEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLPMYIGSRGLYNLKPPTVFVPPCIKDDVEKLLDVHKKLGQVELNVELVALDIGETYELRNDLVVRPFKTQHVIPSQGYIIYSIRKKLRKQYSHLNGKQIEKLKKSGVEITDTILSPEVAFTGDTTADFMLDPLNADALRAKVLITEATFLDDSTSIDHARQHGHTHIFELIENAQWIRNKAVLLTHFSSRYNIEIQLSVTIVFVQPQDLSIVSRSGSEGNWRFVTIMRKRERENPCGVCGHYHKYEEGEVCSICGHRIAVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPACQNLYKNSFTYHCLPDDKSFPFDEANQFLEQCEKDKERVLVHCMSGKSRSPAIVIGYLMKSRGWRLAQSFMWVKERRTSVELSEGAFQQLQEYEKNLFASAGGPLLSPFSHAAGPSSISFGFPKTNDLAPLPAFSCASTPSIFARAPLDVAPTEFTFGASQSVTGNPFNTTNPPNPNVTDIQMDGS	623

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car02g01785	623	PANTHER	TRNASE Z TRZ2, CHLOROPLASTIC	33	322	-	-
	Car02g01785	623	SUPERFAMILY	Metallo-hydrolase/oxidoreductase	95	322	IPR036866	-
	Car02g01785	623	SMART	dsp_5	400	533	IPR020422	GO:0006470\|GO:0008138
	Car02g01785	623	Pfam	Dual specificity phosphatase, catalytic domain	409	532	IPR000340	GO:0008138\|GO:0016311
	Car02g01785	623	Gene3D	-	78	335	IPR036866	-
	Car02g01785	623	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	400	536	IPR020422	GO:0006470\|GO:0008138
	Car02g01785	623	CDD	RNaseZ_MBL-fold	86	275	-	-
	Car02g01785	623	PANTHER	-	33	322	-	-
	Car02g01785	623	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	459	525	IPR000387	GO:0016311\|GO:0016791
	Car02g01785	623	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	401	535	IPR029021	-
	Car02g01785	623	ProSitePatterns	Tyrosine specific protein phosphatases active site.	478	488	IPR016130	GO:0016311\|GO:0016791
	Car02g01785	623	MobiDBLite	consensus disorder prediction	599	623	-	-
	Car02g01785	623	Pfam	Beta-lactamase superfamily domain	114	315	IPR001279	-
	Car02g01785	623	Gene3D	Protein tyrosine phosphatase superfamily	394	539	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car02g01785	Car-Chr2	47880557	47890986	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car02g01785	355	520	Protein tyrosine phosphatase (PTP) family	AT2G04550	72.781	5.69e-88	269

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car02g01785	K00784		-	gmx:100808196	540.421