Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01736 ATGATGAGCAGAAAAAGGCATCTAAATCAATCCAAGAATCCATTCAATGCTCACCCTTTTGAAGCAGTTAACTCTAGATCATGGCATCCTGTGGAGTTCATAAAAGTCAATTCAGGAACTATAACCATGCATTTCATAGATAATCACCATATGGTTATGGACAAAGGTACCTTATCAGACATTCGAATAAGGTCAAGGAAAGCTATTATATCTGATTGCTCTTGTTTTTTACGTCCTGGAATCGACATATGCGTGCTTTCAGCCCCTCGTCGTCGAGCCAATGATTCACTTGGTTTAAATATTGAACCTGTTTGGGTTGATGCTAGAATAAGTTCTATACAAAGGAAGCCGCATGAATCCGAGTGCACGTGTCAGTTTTTCGTCAACATCTATGTTGATCAAGGTTCACTTGGCTTAGAGATGAGAACTCTTGATAAGGAGATCAAAGTATATGGACTCAATCAGATCTCAATCCTCCAAAGAATTGAACATAATCCTTGTGAAAATAAGCATTACCGGTGGGCTTCATCCGAAGACTGTACTTCATTACCGCACACTAAATTGCTTTTGGGAAAATTTTTATCCGATATTTCATGGTTAGTTGCTGCATCAGTTATCAAGAAGGTTTCGTTCTGTGTAAGATCTGTTGAAAACAAGATGGTGTATCAACTTTCGGGAGGTCGTACTACTAGCTCATCATCAAGCACAGAGTCTCAAATTGATGTTGTGAGTTTCAAACTAGACAATGGCTCGTTTGTACCCTTTGTTTCTCAAGTTGCTATAGCTAGCTCGACCAAGAGAGACGACCGTGCACTTGAATCCTGTGCGGATGAAGCATCGTCATCTTTTAATGTTGACGGCTTACGACGTTCCAAACGCCGACATGTACAGCCTGAGCGTTACCTTGGTTGCGAAGTTAAAGCGTTGGATGTTGGTTCCTTTAGAAACAGGCCTCCGGTTAGAATAGATACAAGCAAAGAAGACGAAATGTTGTTGCCGTTATCCTGCTTGTTTCGTTTGCAACAATACAGTCTAGAAAAGGATGCTGCTCACAAACGTCAGAAGACCAACAAACCGAATGCGTGCCGGGAGCTTTTAGTGTACAATAGAAGGTCTAAAACACGAGAGGTGAAGTCTCGTGATGTTGATCAAAATGAACATAATCCACTCGCCATCATTCCTCTTCCCGATCACGTTGATGATCCAATAGCTGTTGAACATTGTGGTGTAAATGACAAGGTTACTAGAAGTTACGAACACGAGTCTACTGAAATTTCTTCGAAATATTGTCATCTGATTAATAGTCCAAAACCAAAGAGCAAAAACATTCCTTTGTTAGATTTTCCTGTGAAGTCAGACAATGCTGAAAGGAGCGGCGATGTTTCTTCAAGATGTCCATATAGTTATGGCTCCCCTAAGTTACAAAAGAAAAGTTTAGGCGGCATTGAGGATATGGATCTTGGAAATAGATGGGAAGGGATAAAAATAAAAGCAAAAAGAGGGTTTCGGGAGGGGAAATACCGTTCGACGTATTTGAGAAATCGAAACAATGGCGAAGGAAGAACTTACAATTATAAAGACAGAACTTTGAATGCAGCTGCATACAAGGATTTGATAAATTCGTACTTATCGAATATTAATACAATGCCAGTCAAAGAAGAACCGCCTATTACTGATCAGTGGAAGGAATGCAACACAACAAGCAGTTTTGGACAAAATCAGGAAACCGAGAATTGCCATGATGAGGATGAGGAGAAAAGAGCTGAAGAAGAAACGTTGTGGAAGGAACTGGAAGTGTCACTTGCATCAAGTTATTTTGACGACAATGAGGTTTCTACCGAGACTCTGGAAAAATCGAAAGAAGTTTGTGAACATGAAAATAGATTGGATGAAGAAATTGGAATATACTGCCTTAAATGTGGCTTTGTGACCACCGAAATCAGATATATCGATCCACCCTTTGTTGAAAATTCAGTGTGGCGCCAAGAGGAGAAGCAGTATGAGGTAGAAAATAAAGAGGCCACGAAAGTTGATGAAGACGATGATTTCCATTTTTTCCCGACCGACGCTTCTCCGGACGAACCAATATCTGAAGAGAACGACAGCGTTTGGTCATTAATTCCTGAACTCAGACATAAGTTACATGTGCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAGAATGTTGCAGGGTCTACAAATCCGGGACTAATCGAATCACAATCCAAAAATACAGGTGGCTGCGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTTCTCATCATCGCTTTTCTTGTTAGCTACTTGAAGTTATTTCCTGGGAAAAGACCTCTAGTTCTTGCTCCGAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTATTTGATTCACGGTCGGAGAACCTATAGGGTATTCAGGCAGAACTCAGTGGCGGTTCTTCCCGGAGTTCCCAAGCCTACAGATGATGTCAAGCATGTTTTGGATTGCCTCGAGAAGATACAAAAATGGCATTCACAACCTAGTGTTCTAATCATGGGTTACACTTCATTTTTAACGTTGATGCGAGAGAATTCGAAGTTTGCACATAGAAAGTTTATGGCTAAAGTGTTGAGGGAAAGTCCTGGACTGCTTGTACTCGATGAAGGTCACAATCCGAGAAGCACAAAATCGAGGTTGAGAAAAGTTTTGATGAAAGTACAGACGGAATTGAGAATATTACTTTCCGGTACTTTGTTTCAAAATAATTTCTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCCAAGTTTGCTCATGAAGTATTGAAATTTTTAGACCCGAAATACCGGAGGAAAAGGAAAGGAGCAGAAAGAAAAGGAGCGGAAAAGGCGCAATATTTAATCGAGGCACGAGCTAGAAAATTCTTCTTAGATAAAATTGCAAAGAAAATTGACTCAAATGATAGTGATGAAAGGATGCAAGGTCTAAACATGTTGAGAAATGTGACAAACGGTTTCATTGATGTTTATGAAGGTGGAAGTTCCGACGGTTTACCTGGTTTACAAATTTATACATTGCTAATGAATACAACTGATATACAGCATGAGATTCTGAAGAAACTTCACAGTGACATGTCAAAGTGTAGCGGATACCCTCTCGAGTTAGAGCTTTTAATAACTCTTGGATCGATACATCCTTGGTTGGTCAAAACAGCGGTATGTGCTCAAAAGTTTTTAACAAAGGAGCAATTGAGCGATCTTGATAAATACAAGTTTGATTTGAAAATAGGGTCAAAAGTAAGATTTGTTTTGAGCCTTATTTACCGCGTCGTCAAGAAGGAGAAAGTTCTTATCTTTTGCCACAACATTGCTCCTGTAAGATTATTTCAAGAATATTTTGAGAAGTACTTTGGATGGCAAAAGGGTCGCGAAGTTTTAGTACTAACAGGTGAACTCGAGCTCTTCGAACGTGGAAGAGTGATGGATAAGTTCGAGGAGCCCGGTGGTGTATCGAAGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCGGCTTCTCGAGTGATCATGTTGGACTCGGAGTGGAACCCTTCAAAAACAAAGCAAGCTATTGCACGCGCCTTTCGTCCGGGTCAGCAAAAAATGGTTTATGTGTATCAGCTGTTGGTGACGGGTTCGGGTGTCGAGCATGATTTTCAGCGAGGCGTTTGTCGAGGACCCTTCTCGTTGGCAAGCTGA 3762 0.4064 MMSRKRHLNQSKNPFNAHPFEAVNSRSWHPVEFIKVNSGTITMHFIDNHHMVMDKGTLSDIRIRSRKAIISDCSCFLRPGIDICVLSAPRRRANDSLGLNIEPVWVDARISSIQRKPHESECTCQFFVNIYVDQGSLGLEMRTLDKEIKVYGLNQISILQRIEHNPCENKHYRWASSEDCTSLPHTKLLLGKFLSDISWLVAASVIKKVSFCVRSVENKMVYQLSGGRTTSSSSSTESQIDVVSFKLDNGSFVPFVSQVAIASSTKRDDRALESCADEASSSFNVDGLRRSKRRHVQPERYLGCEVKALDVGSFRNRPPVRIDTSKEDEMLLPLSCLFRLQQYSLEKDAAHKRQKTNKPNACRELLVYNRRSKTREVKSRDVDQNEHNPLAIIPLPDHVDDPIAVEHCGVNDKVTRSYEHESTEISSKYCHLINSPKPKSKNIPLLDFPVKSDNAERSGDVSSRCPYSYGSPKLQKKSLGGIEDMDLGNRWEGIKIKAKRGFREGKYRSTYLRNRNNGEGRTYNYKDRTLNAAAYKDLINSYLSNINTMPVKEEPPITDQWKECNTTSSFGQNQETENCHDEDEEKRAEEETLWKELEVSLASSYFDDNEVSTETLEKSKEVCEHENRLDEEIGIYCLKCGFVTTEIRYIDPPFVENSVWRQEEKQYEVENKEATKVDEDDDFHFFPTDASPDEPISEENDSVWSLIPELRHKLHVHQKKAFEFLWQNVAGSTNPGLIESQSKNTGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFRQNSVAVLPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMRENSKFAHRKFMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAHEVLKFLDPKYRRKRKGAERKGAEKAQYLIEARARKFFLDKIAKKIDSNDSDERMQGLNMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNTTDIQHEILKKLHSDMSKCSGYPLELELLITLGSIHPWLVKTAVCAQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSGVEHDFQRGVCRGPFSLAS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01736 1253 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1242 - -
Car02g01736 1253 SMART ultradead3 710 947 IPR014001 -
Car02g01736 1253 CDD DEXHc_ATRX-like 714 947 - -
Car02g01736 1253 Pfam Helicase conserved C-terminal domain 1102 1218 IPR001650 -
Car02g01736 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1234 IPR027417 -
Car02g01736 1253 Gene3D - 1024 1244 IPR027417 -
Car02g01736 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 942 IPR027417 -
Car02g01736 1253 Pfam SNF2-related domain 712 958 IPR000330 GO:0005524|GO:0140658
Car02g01736 1253 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1106 1253 IPR001650 -
Car02g01736 1253 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 739 939 IPR014001 -
Car02g01736 1253 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1242 IPR044567 GO:0080188
Car02g01736 1253 SMART helicmild6 1130 1219 IPR001650 -
Car02g01736 1253 Gene3D - 690 985 IPR038718 -
Car02g01736 1253 CDD SF2_C_SNF 1094 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01736 Car-Chr2 46457718 46465657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01736 1098 1246 RAD5 or RAD16-like Gene Family AT5G43530 32.237 4.01e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car02g01736 SNF2_N 2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01736 K10875 - gmx:100811703 1708.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01736 02 46457718 46465657 Car02g01736 02 46457718 46465657 ECH
Car05g01504 05 59370581 59375808 Car02g01736 02 46457718 46465657 PCT