Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01733 ATGGGTGGAAATTCTCCATGTGCTTCATGCAAGCTTCTGAGACGCAGATGCACAAAAGATTGCACCTTTGCTCCTTATTTTCCTTCTCATGAACCACAAAAGTTTGCCTTAGTTCACAAGGTTTTTGGTGCTAGTAACGTTAGCAAAATGTTGCAGGAGCTACCTGTTCAGcaaagagcagatgcagtgagcagtctagtgtatgaagcaaatgcaagAGTGAGGGACCCAGTTTATGGTTGTGTTGGTGCAATTTCTTATTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTCTGCATTCAAATGCAACAACATGAACAAGTCATTAATCCAACTCAAGAAATCAACACAGATCAGAAATCTTATTTTCTTCAACAAGATGATCTCACTCAGTACCTTAGTTATGATTCTTCTAGTAATGTAATTCATGATTCTCTTAAGAGAGATAATAATATCTATGGACATAACATGATTTCTTGA 507 0.3373 MGGNSPCASCKLLRRRCTKDCTFAPYFPSHEPQKFALVHKVFGASNVSKMLQELPVQQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQQHEQVINPTQEINTDQKSYFLQQDDLTQYLSYDSSSNVIHDSLKRDNNIYGHNMIS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01733 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Car02g01733 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
Car02g01733 168 Coils Coil 85 105 - -
Car02g01733 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Car02g01733 168 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01733 Car-Chr2 46432782 46434097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01733 3 133 AS2 family AT2G30130 76.642 1.18e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car02g01733 LOB 2.4e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01733 02 46432782 46434097 Car05g01496 05 59262447 59262939 ECH
Car02g01733 02 46432782 46434097 Car02g01733 02 46432782 46434097 ECH
Car05g01496 05 59262447 59262939 Car02g01733 02 46432782 46434097 PCT