Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01721 ATGAATGATTCAAGATCAAAAAACATGATGATATCTCCAGGTTTATTACCAACAGAATCATTACTAGATTCATTAGTTCTCATAACAAATGAAATTGGTTCAATTGAGAAATTACCATTAGTACACAAAAGTAATGTATCATCAATGATAAGAAGGATAAAGCTTCTTTCATCATTGTTTGAAGAGATTCAAGAATCAGAAACACAACTTCCACCTTCATCAATCCTTTGTTTCACAGAACTTTTGTCAGTGATCACAAGAGTGAAGGTTTTGATCCAAGAATGCAAAGATGGAAGCTCACTTTGGAGTCTaatgcaattagattcaatttcaagtcaattTTATGTGCTTGTGAAGGAAATGGGAAGAGCACTTGATATTCTTCCATTGAATTTGCTTAATGTAACATTTGATATAAAGGAGCAAATTGAGCTTTTGAATAAACAAGCTAAGAGAGATTATGTTGATGAAATATCAAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGCACAGAATGGATAAATTCAGGTCATCACACTTGTCCTAAAAGTGGTCAAAGACTAATTCACACTGCTCTTATACCAAACTATGCATTGAAGAGCCTTGTTCATCAATGGTGCTATGAAAACAATGTTACATTGAATGATTCAATCTCAAACGTTAACAACAACAAAAGGAACAAGAAGAATGAGCATGCTGCAATTGATCACATTTCAGCAAACAAAGCAGCAACAGATGCTGTCAAAATGACAGCAGAGTTTTTGGTTGGGAAATTAGCAACCGGTTCGACCGATATCCAAAGACAATCCGCTTATGAGATTCGGATACTAGCGAAAACCGGAATGGACAACCGAAGAATCATAGCCGAGGTAGGGGCTATTCCATTTCTAGTAACACTTTTAGCATCAAAAGATTCGAGAATCCAAGAACATGTAGTGACAGCATTGTTCAACCTGTCTATCTACGACAACAACAAGATTTTGATCATGGCGGCTGGAGCGGTCGAAAACATAGTAAAAGTTCTTGAATCAGGAAAAACTATGGAAGCAAGAGAAAATGCCGCGGCCGCGATATATAGTTTATCAATGGTAGATGATTGTAAAGTTCAAATTGGGGGAAGTACAAATGCAATACCTGCATTAATAGGACTATTAAAAGAAGGTACACAAATTGGTAAAAGAGATGCTGCAACTGCATTATTCAATCTTGCAGTTTATAATCCTAATAAGATAAGCATAGTTAAAAGTGGAGGAGTTAGTTTACTTGTTGAGTTGTTGATGGATGATAAAGCTGGTATAACAGATGATTCTTTGGCTGTTCTTGCTGTGTTATTAGGTTGTTCACAAGGGCTAGAAGAGATAAAGAATAGTAGAGAAGGGGAATTGGTCGCAAGGAAGCTTTTGGCAAACCCTAGGAGTATTCCTTCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGGAGAAAGGCTGATGCATTGCTTAGAACATTGATAATCAAACTTACAACGACAAACTTCTCCCATGTTCATTCATTGCAAACCACACTCCTTGATGCTAAGGTTGCCTTATCGATATCTATACACCCATTCTTGATATGGTTTTATACCCAGCCAAATACGGGTTTGGGCATTCACGTCAAGGATGTTCTGAACCAGGGCTATTGGAGATGGGTCCTGTGTGCAATGTACTTGACATAA 1704 0.3674 MNDSRSKNMMISPGLLPTESLLDSLVLITNEIGSIEKLPLVHKSNVSSMIRRIKLLSSLFEEIQESETQLPPSSILCFTELLSVITRVKVLIQECKDGSSLWSLMQLDSISSQFYVLVKEMGRALDILPLNLLNVTFDIKEQIELLNKQAKRDYVDEISKLEVEAQNQAGTEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVTLNDSISNVNNNKRNKKNEHAAIDHISANKAATDAVKMTAEFLVGKLATGSTDIQRQSAYEIRILAKTGMDNRRIIAEVGAIPFLVTLLASKDSRIQEHVVTALFNLSIYDNNKILIMAAGAVENIVKVLESGKTMEARENAAAAIYSLSMVDDCKVQIGGSTNAIPALIGLLKEGTQIGKRDAATALFNLAVYNPNKISIVKSGGVSLLVELLMDDKAGITDDSLAVLAVLLGCSQGLEEIKNSREGELVARKLLANPRSIPSLQSLAADGSLRARRKADALLRTLIIKLTTTNFSHVHSLQTTLLDAKVALSISIHPFLIWFYTQPNTGLGIHVKDVLNQGYWRWVLCAMYLT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01721 567 SUPERFAMILY ARM repeat 253 457 IPR016024 -
Car02g01721 567 SMART arm_5 322 363 IPR000225 GO:0005515
Car02g01721 567 SMART arm_5 365 405 IPR000225 GO:0005515
Car02g01721 567 SMART arm_5 406 446 IPR000225 GO:0005515
Car02g01721 567 SMART arm_5 281 321 IPR000225 GO:0005515
Car02g01721 567 Gene3D - 20 133 IPR036537 GO:0007166
Car02g01721 567 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 171 500 - -
Car02g01721 567 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 155 - -
Car02g01721 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Car02g01721 567 Pfam Armadillo/beta-catenin-like repeat 283 320 IPR000225 GO:0005515
Car02g01721 567 PANTHER U BOX DOMAIN-CONTAINING 171 500 - -
Car02g01721 567 PANTHER U BOX DOMAIN-CONTAINING 18 155 - -
Car02g01721 567 ProSiteProfiles U-box domain profile. 172 213 IPR003613 GO:0004842|GO:0016567
Car02g01721 567 SUPERFAMILY RING/U-box 171 214 - -
Car02g01721 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Car02g01721 567 Pfam MCAfunc domain 41 156 IPR045766 -
Car02g01721 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 215 IPR013083 -
Car02g01721 567 Gene3D - 218 529 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01721 Car-Chr2 46320388 46323799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01721 172 496 U-box Gene Family AT3G46510 44.615 1.26e-76 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01721 - - cam:101513231 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01721 02 46320388 46323799 Car02g01721 02 46320388 46323799 ECH