Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01718 ATGTCGAATCAAAACAACCAGTCGAGCACTGCGACATTCGAATGGAACTTCGAAGACGACAAAACTCTCCAAATCCAAGGCCGAAAACTCTTATTCTTCGCCGTCGTTTTCACCATCATCGTCCTTTTCACAGCTCTATTCATGTGCTCCCGTTGGATCTTCCGAAACCGCAGCCTTCTCGGTTCAATCCCTACTCACCACGCGCCGTTCGTCACTTCTTCACCGTCGCAGGGACTCGATCCCGACGCGATTAAAAAACTTCCTATCATACTCTACCAAACTAATTGTTCCAATCGCGCGTTGGAGGAAACGGAATGTTGCATCTGTTTAAGCGCGTTTAGAGATGGAGATAAGTTGAAAGTGTTGCAGAAATGTGACCATTGTTTTCACTGTGAATGTGTTGATGCGTGGCTTGTGAATCATTCGAGTTGTCCTCTTTGTAGAGCTTCTCTTAAACTTGATTCATCTTTACCAATGATTTTGATTCAAGAACCACCTGTTAGATATAATCTCCCTCTTTGA 522 0.4425 MSNQNNQSSTATFEWNFEDDKTLQIQGRKLLFFAVVFTIIVLFTALFMCSRWIFRNRSLLGSIPTHHAPFVTSSPSQGLDPDAIKKLPIILYQTNCSNRALEETECCICLSAFRDGDKLKVLQKCDHCFHCECVDAWLVNHSSCPLCRASLKLDSSLPMILIQEPPVRYNLPL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01718 173 SUPERFAMILY RING/U-box 94 154 - -
Car02g01718 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Car02g01718 173 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Car02g01718 173 PANTHER RING-H2 FINGER PROTEIN ATL66 9 163 - -
Car02g01718 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 9 163 IPR044675 -
Car02g01718 173 Pfam Ring finger domain 105 148 IPR001841 -
Car02g01718 173 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01718 Car-Chr2 46285989 46286920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01718 16 156 C3H Transcription Factor Family AT3G11110 42.657 1.26e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01718 - - gmx:100794554 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01484 05 59120444 59121731 Car02g01718 02 46285989 46286920 PCT