Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01717 ATGATGATTGGAGCAAATTCAAATTCTAGTTCCGGTGATGATAACGGCGATAAAGTGAAAGGTTCATGGAGTCCACAAGAAGACGCAACGCTGGTAAAATTGGTAACCGAACACGGCCCGCGAAATTGGTCCGTCATAAGCAACGGAATCCCCGGTCGTTCCGGCAAATCATGCCGTCTCCGGTGGTGTAATCAGCTGAGTCCCGACGTTCAACACCGTCCTTTCAGTCCGTCGGAAGATAAGATCATAATTAAAGCGCACGCCATTCACGGTAACAAATGGGCGACGATTTCTCGTCTTCTTCCAGGTCGAACCGATAACGCGATAAAAAACCACTGGAATTCAACCCTCCGCCGTCAACATATGGAGGTTCCGATAATTCCCTCCTCCGTGGGTATCGGAAAACGTCCTCCTAACGCTTATGACGGTTATAACAGTTTGTTGGATCTACGTTGCCCTTATAAACGGCCGTGTTTAGAGAATAACAGTTCACGTGACGGTGAAGAAACGGTTACGGAAGAGGAAGATGCGGGTAATAACGTTACCGTTACGACGTCGTTAAGTCTTTTTCCACCTGGAGAGAAATTTATGAAAGAAGAAGAAAATAAAAAAGAAGAAATTTTTGAAGCTAATGGGAATGTATTTGGAAACGATTGTTTGAAATCGATTATTCAGCGTATGATAGCGGAGGAAGTTAGGAATTATGTTGATAACATGCGCCGGGATGGGTTTCAACTTGGAACTGGGTTAGCTCCTGATTCAACATTTCGAAAGTGA 777 0.4466 MMIGANSNSSSGDDNGDKVKGSWSPQEDATLVKLVTEHGPRNWSVISNGIPGRSGKSCRLRWCNQLSPDVQHRPFSPSEDKIIIKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRQHMEVPIIPSSVGIGKRPPNAYDGYNSLLDLRCPYKRPCLENNSSRDGEETVTEEEDAGNNVTVTTSLSLFPPGEKFMKEEENKKEEIFEANGNVFGNDCLKSIIQRMIAEEVRNYVDNMRRDGFQLGTGLAPDSTFRK 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01717 258 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Car02g01717 258 Gene3D - 74 120 - -
Car02g01717 258 ProSiteProfiles Myb-like domain profile. 15 66 IPR001005 -
Car02g01717 258 MobiDBLite consensus disorder prediction 1 23 - -
Car02g01717 258 Pfam Myb-like DNA-binding domain 74 116 IPR001005 -
Car02g01717 258 Pfam Myb-like DNA-binding domain 20 66 IPR001005 -
Car02g01717 258 SMART sant 71 119 IPR001005 -
Car02g01717 258 SMART sant 19 68 IPR001005 -
Car02g01717 258 CDD SANT 22 64 IPR001005 -
Car02g01717 258 PANTHER OS01G0850400 PROTEIN 9 180 - -
Car02g01717 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Car02g01717 258 PANTHER MYB PROTEIN-RELATED 9 180 - -
Car02g01717 258 Gene3D - 19 71 - -
Car02g01717 258 MobiDBLite consensus disorder prediction 161 194 - -
Car02g01717 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Car02g01717 258 CDD SANT 74 117 IPR001005 -
Car02g01717 258 MobiDBLite consensus disorder prediction 1 17 - -
Car02g01717 258 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01717 Car-Chr2 46265424 46266670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01717 15 120 MYB Transcription Factor Family AT4G37260 73.585 5.32e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g01717 Myb_DNA-binding 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01717 - - cam:101514420 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01717 02 46265424 46266670 Car02g01717 02 46265424 46266670 ECH