Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01711 ATGGAGAATAAGCTTCAGAAGGGTATTCACAACTCCTCAATCTTGCTTGAATTATCTGCATCTGATGATTTTGAAGCTTTCAAAAGAGAAGTAGATGAGAAGGGTTTGGATGTAAATGAAGAAGGCTTTTGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAAAGAGGACTCCACTCATGATTGCTTCCTTGTTTGGAAGCACTGAGGTGCTCAAGTATATTATTTTGACAGGAAAGGTTGATGTCAACAGAGTTTGTGGTTCTGATATGGCCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCCGAATTCTCGCTTGAGATTGTTAAGCTCTTGCTTGATGCTGGTGCAGATGCTGATTGTCTTGATGCTAGTGGAAATAAACCGGTTGATCTGATTGTTCCTGCCTTTAATTATTTGTCAAAATCACGTAGGAAGGTGTTGGAGTTGTTTCTGAGAGGTGGTGTGTGTGATGAACTTGTCCTAGGAGAGATGGATGATCCTTTTTCGTTGAATGAAGGTTTGGAGAAAAAAGAAAAAGAAGGTGGTGATAAGAAAGAATATCCTATTGATATATCGTTGCCTGACATAAACAACGGTGTGTATGGATCGGACGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCGTGCTCGAGGGCTTACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAAGAAATACCCTTACAGCTGTGTTCCCTGCCCCGAGTTTCGCAAAGGGTCCTGTCAGAAAGGAGATTCTTGTGAGTATGCACACGGTGTTTTCGAGTCATGGCTACATCCTGCCCAATATCGAACAAGGCTTTGCAAAGACGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGTTGCGCCCCGTGTATGCCTCCACAGGATCAGCTATGCCTTCCCCAAAATCTTATTCAGCTAGTGCAATTGACATGACATCGATGAGTCCGTTGGCTCTTAGTTCCTCATCTTTGCCTATGTCAACTGTTTCAACACCTCCCATGTCTCCCTTGGCAGCTTCATCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAACTAAACTTCACTCCACCATCATTGCAGCTCTCAGGTAGCCGCTTGAAGAGTGCTTTGAGTGCCAGGGATATGGATCTTGAGATGGAACTGCTCGGTCTGGACAGTCCTCGTCGTcaacaacagcaacaacagcaacagcaacaacaaTTGATTGAAGAGATTGCAAGAATCTCTTCTCCATCTTTCCGGAGCAAGGAATTCAACAGGATTGCTGATTTGAATCCAACAAACCTTGACGACCTGTTAGCATCTACTGATCCTTCTTTACTATCTCAACTACACGGACTCTCTATGCAACCTTCAACACCGACACAGATGCAATCATCTCCAAGTGCAATGCAGATGCGCCAGAACATGAACCACCTCCGTGCAAGTTATCCATCCAACATGCCTTCCTCTCCAGTGAGGAAACCCTCAGCATACGGGTTCGATTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGGTCAGCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATCGACCGTGGCGCAGCAACCAACCACCATATTGGGATGTCTTCGCCTTCCAACCCTTCTTGCAGGGTGTCCTCAGGCTTTTCCGATTGGAATTCTCCCACGGGGAAACTCGATTGGGGTGTAAATGGAGATGAGCTAAGCAAGCTGAGGAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAGTAGCAGCAACTGCATCCCCAACAGCACATTCAGGACATGCTGAACCTGATGTCTCTTGGGTTAATTCATTGGTTAAGGATGTTCCTTCTGAGAATTCTGAGATGTATGGCGCCGAGAGGATGCGAcagcagcagcagcagcagcagcaATATGATCTGAGTAGAGAGATGCTTCCACCATGGATGGTGGAGCAGATGTATATAGAGCAAGAGCAGATGGTAGCATGA 2043 0.4454 MENKLQKGIHNSSILLELSASDDFEAFKREVDEKGLDVNEEGFWYGRRIGSKKMGSEKRTPLMIASLFGSTEVLKYIILTGKVDVNRVCGSDMATALHCAVAGGSEFSLEIVKLLLDAGADADCLDASGNKPVDLIVPAFNYLSKSRRKVLELFLRGGVCDELVLGEMDDPFSLNEGLEKKEKEGGDKKEYPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASAIDMTSMSPLALSSSSLPMSTVSTPPMSPLAASSSPKSGNLWQNKLNFTPPSLQLSGSRLKSALSARDMDLEMELLGLDSPRRQQQQQQQQQQQLIEEIARISSPSFRSKEFNRIADLNPTNLDDLLASTDPSLLSQLHGLSMQPSTPTQMQSSPSAMQMRQNMNHLRASYPSNMPSSPVRKPSAYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATNHHIGMSSPSNPSCRVSSGFSDWNSPTGKLDWGVNGDELSKLRKSASFGFRNNGVAATASPTAHSGHAEPDVSWVNSLVKDVPSENSEMYGAERMRQQQQQQQQYDLSREMLPPWMVEQMYIEQEQMVA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01711 680 Pfam Ankyrin repeats (3 copies) 53 123 IPR002110 GO:0005515
Car02g01711 680 MobiDBLite consensus disorder prediction 345 366 - -
Car02g01711 680 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 274 IPR000571 GO:0046872
Car02g01711 680 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Car02g01711 680 PANTHER UNKEMPT FAMILY MEMBER 6 679 IPR045234 -
Car02g01711 680 Gene3D - 250 312 - -
Car02g01711 680 Gene3D - 9 150 IPR036770 -
Car02g01711 680 SUPERFAMILY Ankyrin repeat 10 134 IPR036770 -
Car02g01711 680 SMART ANK_2a 92 124 IPR002110 GO:0005515
Car02g01711 680 SMART ANK_2a 57 87 IPR002110 GO:0005515
Car02g01711 680 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 6 679 - -
Car02g01711 680 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Car02g01711 680 ProSiteProfiles Zinc finger C3H1-type profile. 249 276 IPR000571 GO:0046872
Car02g01711 680 SMART c3hfinal6 284 307 IPR000571 GO:0046872
Car02g01711 680 SMART c3hfinal6 249 275 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01711 Car-Chr2 46172206 46174248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01711 10 675 C2H2 Transcription Factor Family AT5G12850 39.021 6.78e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car02g01711 Ank_2 1.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01711 - - gmx:100783376 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01711 02 46172206 46174248 Car02g01711 02 46172206 46174248 ECH