Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01680 ATGGAAGAGAACATGTCAGGCTTTTGCATGAGATCATCATCTGGTAAAAGTGGTAGCAGTGGCACAAAGTGTGGGCGTTGGAATCCAACAACAGAACAAGTTAAACTTCTGACTCAACTGTTCAGAGCAGGCCTCAGAACTCCAACCACTGATCAGATTCAAAACATATCCAATCAACTCAGTTTCTATGGTAAGATTGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCTAGGGATAGGCAGAAACTTAGAAGGAAACTTaacaaacaaatgcaactacagcaacaacaacagcaacaacagcaactacaaGTTCATCATTGCCAAATCAATCATGATAATAATGTGATGATTAATAATAACCATTTTGTTGGACTTGGTGAGATGTACTCAGAGCCTAATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCCTTTGGTGAATCAGAATCAGAGAAACTAAGTATGCATGTAAATGAATGCAGGGAAAATACAATGTTTGCATACACATGTAACATGGGAGAACAAATGGAGCATCCACCATTAGATTTGCGGTTGAGCTTTGTGTAA 585 0.3556 MEENMSGFCMRSSSGKSGSSGTKCGRWNPTTEQVKLLTQLFRAGLRTPTTDQIQNISNQLSFYGKIESKNVFYWFQNHKARDRQKLRRKLNKQMQLQQQQQQQQQLQVHHCQINHDNNVMINNNHFVGLGEMYSEPNRVIETLELFPLNSFGESESEKLSMHVNECRENTMFAYTCNMGEQMEHPPLDLRLSFV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01680 194 SMART HOX_1 22 89 IPR001356 GO:0003677
Car02g01680 194 Pfam Homeodomain 24 84 IPR001356 GO:0003677
Car02g01680 194 Coils Coil 83 107 - -
Car02g01680 194 CDD homeodomain 26 85 IPR001356 GO:0003677
Car02g01680 194 ProSiteProfiles 'Homeobox' domain profile. 20 85 IPR001356 GO:0003677
Car02g01680 194 Gene3D - 2 88 - -
Car02g01680 194 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 181 - -
Car02g01680 194 SUPERFAMILY Homeodomain-like 25 84 IPR009057 -
Car02g01680 194 MobiDBLite consensus disorder prediction 7 28 - -
Car02g01680 194 MobiDBLite consensus disorder prediction 1 28 - -
Car02g01680 194 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 181 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01680 Car-Chr2 45763419 45764817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01680 18 194 Wox Gene Family AT3G11260 52.941 2.81e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Car02g01680 Homeodomain 4.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01680 - - cam:101494967 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01680 02 45763419 45764817 Car02g01680 02 45763419 45764817 ECH
Car06g00124 06 1530842 1531578 Car02g01680 02 45763419 45764817 PCT