Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01672 ATGGATTTGGAAACCCTTTATTCTCCTTATTCTATGTTGGATTCAAATTGGTTTGTTGAAGAGAGTTACAAGAAAGAATGGACAAAAGAAGATAACAAAAAGTTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCTGATAGATGGATAAAAGTGGCTGAGATGATTCCTGGTAAGACTGTGTTTGATGTGATTAAGCAATATAGAGAATTGGAAGAAGATGTGTGTGAAATTGAAGCAGGAAATGTTCCTCTTCCTGGTTATTTTGCATCTTCTTTCACCTTTGAGGTTGTTGATAATCACAACTATGATGGAAGTAGAAGAAGGGCTTTAAGTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGacgttttctgatgggacttctaaagtatggaaaaggagattggagaaacatatctcgcaattttgttgtcacaaagacaccaacacaagtagcaagccatgcacagaagtactacataaggcaaaaagtttctggaggaaaagataaaagaagaccaagcattcatgacataacAACTCTTAGTCTCACACAAACTTCTTCATCAAATAAGAACATTAATCCTAACATGTCAAAAGTACAAATGGGTTGGAGTAGTAGTCACTGCAATGATGGATCACTCATGGCTTTCAATCCAAATAGTGATGATTTCACTTCCAAGAGCCTTAAAATTCAAGGGCAGGATCTTTATGACTGCTCTTTTCATGAAGCTTACGCTAAGATGAAAGTTTCGGGTTTCGCGGCGACGGCGGCTTCTAGAGACTTCAATAAAGGAGCTGTTTTTGGTATTCATGCACTGTGA 858 0.3007 MDLETLYSPYSMLDSNWFVEESYKKEWTKEDNKKFESALAIYDKDTPDRWIKVAEMIPGKTVFDVIKQYRELEEDVCEIEAGNVPLPGYFASSFTFEVVDNHNYDGSRRRALSVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTLSLTQTSSSNKNINPNMSKVQMGWSSSHCNDGSLMAFNPNSDDFTSKSLKIQGQDLYDCSFHEAYAKMKVSGFAATAASRDFNKGAVFGIHAL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01672 285 ProSiteProfiles SANT domain profile. 22 76 IPR017884 -
Car02g01672 285 CDD SANT 126 170 IPR001005 -
Car02g01672 285 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Car02g01672 285 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Car02g01672 285 Gene3D - 19 86 - -
Car02g01672 285 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 265 IPR043363 -
Car02g01672 285 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Car02g01672 285 SUPERFAMILY Homeodomain-like 24 79 IPR009057 -
Car02g01672 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Car02g01672 285 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Car02g01672 285 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 265 - -
Car02g01672 285 Gene3D - 125 176 - -
Car02g01672 285 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Car02g01672 285 CDD SANT 26 72 IPR001005 -
Car02g01672 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Car02g01672 285 SMART sant 23 75 IPR001005 -
Car02g01672 285 SMART sant 123 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01672 Car-Chr2 45681382 45683814 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car02g01672 Myb_DNA-binding 6.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01672 - - cam:101492144 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01248 03 56775876 56778604 Car02g01672 02 45681382 45683814 ECH
Car06g02483 06 28012562 28014539 Car02g01672 02 45681382 45683814 ECH
Car05g01239 05 55631520 55634281 Car02g01672 02 45681382 45683814 ECH
Car02g01313 02 39144374 39147570 Car02g01672 02 45681382 45683814 ECH
Car02g01672 02 45681382 45683814 Car02g01672 02 45681382 45683814 ECH