Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01662 ATGCTTGTGAATGAGGACAAATTTCATGCCATTGTGGACATAGATAACGGCTGTCACCGGAGAACGGAACAATGTTCCGTCTCCGGTGACCGGTCAGATGAAGATCAAAGGTCTGAGATTGTAGGAGTGTCTGAAAAACAAAGAGAGTCATCTGATTCCTCTGCTTCAGATTCAGAGTGTTCTGTTGAGTTGGATCTGGATGGTGTAGTTTCTGATGTTAAGGTGCATTTGGATAATAAAGTTGAGAGGGATTGTAGGATTTGTCATCTTAGTATGGATTTGACAAATCATGATGAATCTGGTATTCCTATTGAGCTTGGATGTTCTTGTAAAGATGATTTGGCTGCTGCTCATAAACATTGTGCTGAGGCTTGGTTTAAGATTAAGGGTAACAAAACTTGTGAAATTTGTGGATCAATTGCACACAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAATGGAATGAATCAAGTGATCCCTCTATGGTACCGCCAACTGGACCTTCATCGCCGGCCGAAACTCGAAGTTTTTGGCAGGGACACCGATTTTTGAATTTCCTTCTAGCATGTATGGTATTTGCATTTATCATATCATGGCTTTTTCACTTTAATGTTCCCTCTTGA 630 0.4063 MLVNEDKFHAIVDIDNGCHRRTEQCSVSGDRSDEDQRSEIVGVSEKQRESSDSSASDSECSVELDLDGVVSDVKVHLDNKVERDCRICHLSMDLTNHDESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQWNESSDPSMVPPTGPSSPAETRSFWQGHRFLNFLLACMVFAFIISWLFHFNVPS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01662 209 MobiDBLite consensus disorder prediction 25 59 - -
Car02g01662 209 SMART ringv_2 84 138 IPR011016 GO:0008270
Car02g01662 209 ProSiteProfiles Zinc finger RING-CH-type profile. 77 144 IPR011016 GO:0008270
Car02g01662 209 CDD RING_CH-C4HC3_MARCH 85 138 - -
Car02g01662 209 SUPERFAMILY RING/U-box 79 140 - -
Car02g01662 209 Pfam RING-variant domain 85 137 IPR011016 GO:0008270
Car02g01662 209 MobiDBLite consensus disorder prediction 25 53 - -
Car02g01662 209 PANTHER ZINC FINGER, RING-CH-TYPE 9 209 - -
Car02g01662 209 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 209 - -
Car02g01662 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01662 Car-Chr2 45567262 45570055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01662 30 209 C3H Transcription Factor Family AT5G05830 59.239 4.29e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01662 - - mtr:MTR_5g081560 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01210 03 55889772 55893887 Car02g01662 02 45567262 45570055 ECH
Car02g01662 02 45567262 45570055 Car02g01662 02 45567262 45570055 ECH