Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01628 ATGGCCCCTTCAGATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTTTCTTCACACCCAGAGAGAAAATCTGGTTTCATGAAATGGCTTAGTAAACTTTTCAAAGGTGGGTCCAATAGACCAAGGAGTGGTCGTCATCATGTGCATGACCCTGATGAGGAAAGCATTTCTTGGCGTGCTCCATCTAGAGCTTCGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATTTGGGGCATGCTGTATCACTTGCTACAGCTGAAGATTTGAAGAGACCAAATGGATATAGGTGGGGGGAAACAACTGATGAAGATTATGAAAAGGCACTTCATGGTGCTTTGAATTCATCTGCACACCCTCCATATGCTCCTGCACCTTTTTATCCCAATGAATATAGAAGAATATGTAGTGGCTGCAACCAGGAAATAATCTATGGAAATTGTTTAGGCTGCATGGATTCTTATTTTCATCCAGATTGCTTTTGTTGTCACTCTTGTGGGCAACCCATTACCGAGCGCGAGTTTTCTTTATCAGGAAAGCATCCATATCACAAGTCTTGTTTTAAAGAGTTAACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCAATAAATGCTGCTGGTTTAATTGAATATAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACATATCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCGGAATACGAAATACTATAGACTCGAAGACGGGAGGAGCTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTATATCATTCCATCAGAGACTATTATGAAGGAATCCATATGAGAATTGATCAACAAGTTCCAATGCTTCTTGTTGAGAGAGAAGCACTTAATGATGCAATTGTTGGAGAGAAAAATGGATTTCATCATTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAGCAGACTGTCACAAGTATACATAGAAGGCCAAGAATTGGAGGTCATAGATTTATAGGAATGAGAACTCAACCTCAAAAGCTTACAAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACAGGTGCTATACTTGCCCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGGAACCTCAATCCTGAAGTAGAGGAAGGGATTTGTCAGGTTCTTTCATTTATGTGGCTTGAATCAGAAGTTATGCCAACTAACTTCCAAAGCATGCCTTCAACATCCACAGCTTCTTCCTCTTCATCCTCAAAGAAAGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTCTTCAAGAATCAAATTGCCAATGATTCTTCGCCAGCTTATGGTGGCGGTTTTAGAGCTGCTAATGAAGCTGTTATTAAATATGGTCTACGTAGTACTCTTGAGCATATTCGTTTGACTGGTTTTTTCCCTGTCTAA 1503 0.3999 MAPSDINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRPRSGRHHVHDPDEESISWRAPSRASDDRARAQKEKEDLGHAVSLATAEDLKRPNGYRWGETTDEDYEKALHGALNSSAHPPYAPAPFYPNEYRRICSGCNQEIIYGNCLGCMDSYFHPDCFCCHSCGQPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTYRCCSCERLEPRNTKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGIHMRIDQQVPMLLVEREALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRFIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSFMWLESEVMPTNFQSMPSTSTASSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVIKYGLRSTLEHIRLTGFFPV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01628 500 CDD LIM_DA1 139 191 - -
Car02g01628 500 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 19 500 - -
Car02g01628 500 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 164 - -
Car02g01628 500 MobiDBLite consensus disorder prediction 41 87 - -
Car02g01628 500 SMART lim_4 138 190 IPR001781 -
Car02g01628 500 Pfam LIM domain 139 192 IPR001781 -
Car02g01628 500 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Car02g01628 500 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
Car02g01628 500 MobiDBLite consensus disorder prediction 46 85 - -
Car02g01628 500 Pfam Protein DA1 289 495 IPR022087 -
Car02g01628 500 PANTHER PROTEIN DA1-RELATED 2 19 500 IPR045218 -
Car02g01628 500 Gene3D Cysteine Rich Protein 126 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01628 Car-Chr2 44573701 44580621 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car02g01628 DA1-like 1.6e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01628 - - gmx:100814983 884.404