Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01607 ATGGGTTGTTGCTTAAGTGCTAGAATCAAAGCTGAAAGCCCTCCAAGAAATGGTTTGAGTTCAAAGGATGGTAGCAAAGATAATGGCTTGAGTGGTCGCACCACTCCCACTACCGGGCCTCCAACTCCTCGAACTGAGGGCGAGATTTTGAATTCTTCAAATATGAAGAGCTTCACCTTTAGTGAGCTGAAAATTGCTACAAGAAATTTTCGTCCCGATAGTGTGGTTGGTGAAGGTGGATTTGGAGCTGTATTTAAAGGGTGGATTGACGAGCACTCACTCGTACCGGTTAAACCTGGGACTGGAGTCGTTATTGCTGTCAAGAGACTTAACCAAGAAGGTTTGCAAGGACATAGTGAATGGTTGACAGAAATCAATTACTTGGGACAGCTGCATCATCCTAATCTTGTGAAATTGATTGGTTACTGCTTCGAAGATGACCAACGGCTTTTGGTATATGAGTTCTTGACCAAGGGCAGTTTAGACAATCATTTATTTAGGAGAGCTTCTTACTTTCAACCGCTTTCTTGGAGTATCCGAATGAAGATTGCTCTTGATGCTGCTAAGGGTCTTGCATATCTTCATAGCGATGAAGCAAAAGTGATATATAGAGACTTCAAAACATCAAATATATTACTTGACTCGAAATATAATGCAAAACTTTCCGATTTTGGCTTGGCAAAGGACGGGCCTGCAGGCGATAATAGTCACGTCTCTACGAGAGTAATGGGAACATACGGCTATGCGGCTCCCGAATATATGGCCACAGGTCATTTGACCAAAAAGAGTGATGTATACAGCTTCGGCGTTGTGCTCCTCGAAATTATGTCCGGAAAACGTACACTTGACAACAATAGGCCATCCGGGGAACATAATTTAATTGAATGGGCCAAACCTTACCTAAACAGCAAACGCCGTATCTTCCAAGTTATGGATGCTCGCATCGAAGGCCAATACACGTTGCGTCAAGCAATGAAAGTAGCTGACCTTGCGGTTCAATGCTTGTCTGTCGAACCAAGATTCAGACCAAAAATGGACGAGGTCGTAAGGGCATTGGAGGAACTTCAGGGTTCCGATGATACGATCGAAGGAGCGGGAAGCTCTCGAGATCGAAATATTAGAAGGAGTGTTCATAGCTCAAGGAGCAATGGTCCTAGACAACATAGAAGTAAACAAAGTGAAACAAAACTATGA 1194 0.4347 MGCCLSARIKAESPPRNGLSSKDGSKDNGLSGRTTPTTGPPTPRTEGEILNSSNMKSFTFSELKIATRNFRPDSVVGEGGFGAVFKGWIDEHSLVPVKPGTGVVIAVKRLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCFEDDQRLLVYEFLTKGSLDNHLFRRASYFQPLSWSIRMKIALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSKYNAKLSDFGLAKDGPAGDNSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRTLDNNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYTLRQAMKVADLAVQCLSVEPRFRPKMDEVVRALEELQGSDDTIEGAGSSRDRNIRRSVHSSRSNGPRQHRSKQSETKL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01607 397 Pfam Protein tyrosine and serine/threonine kinase 74 352 IPR001245 GO:0004672|GO:0006468
Car02g01607 397 CDD STKc_IRAK 76 355 - -
Car02g01607 397 MobiDBLite consensus disorder prediction 9 51 - -
Car02g01607 397 MobiDBLite consensus disorder prediction 356 397 - -
Car02g01607 397 MobiDBLite consensus disorder prediction 18 51 - -
Car02g01607 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Car02g01607 397 SUPERFAMILY Protein kinase-like (PK-like) 44 352 IPR011009 -
Car02g01607 397 Gene3D Transferase(Phosphotransferase) domain 1 156 374 - -
Car02g01607 397 PANTHER KINASE 1B 24 395 - -
Car02g01607 397 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Car02g01607 397 PANTHER OS01G0588500 PROTEIN-RELATED 24 395 - -
Car02g01607 397 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car02g01607 397 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01607 Car-Chr2 43881083 43884120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01607 15 352 Glycoside Hydrolase AT3G07070 47.578 2.26e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car02g01607 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01607 - - gmx:100775335 698.738