Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01605 ATGAGGAGGAACAGTCCAGGTTACTACAGTCCTCCACGGAGAGGATACGGTGGAAGGGGACCTAGTAGGAGGGGTTAcggtggtggtggcggtggcggtggcggtggcggtggtggtggTGGAGGTAGGCGCAGAGAAAGCAACAATGGAAGCCTTTTGGTTCGGAACATTCCTCTAGATTGTAGACCTGATGAACTTCGAGTCCCGTTCGAGCGATTTGGACCTGTTCGTGATGTCTACATACCAAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCTTATGATGCCTCCGAGGCGCAGTACCATATGAACAGACAAATATTTGCTGGAAGGGAAATAACCGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAAGAGATGCGGCATCGGACTAGTAGGAGCAGAGGACCAGCAGGCTATGGAGGACAAAGGTCTTCCTATCACGGGCGTTCTCGATCTCGCTCAATTTCCAGATCAAGATCTCCTCCTTATCACTCTGGTTCTAGAAATCGCTATCGCTCAAGGTCCAGGTCCTTCTCCCCTCCCCCAAGACGGCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGCAGAGCGCCCTAGATCACCTAGAAGTCCTATTGTGGAGCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTATGGCAATGGTGCTGATGAGAATCCAAGCAATGGATATGCTGAGAAATCTGTGTACAAATCTGAGGCTGATCGAGGCCAGTGGAAGTCACCCCCAAGAACatctagatcacctcctggatctagatcaagatctGCCGATTTGTCACCTAGACGTGGAAGATGA 858 0.4545 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGGGGGGGGGGGGGGRRRESNNGSLLVRNIPLDCRPDELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREITVVVAAETRKRPEEMRHRTSRSRGPAGYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPPPRRQGDYSVSPRRHAERPRSPRSPIVERDGDHKRRSYSPAYGNGADENPSNGYAEKSVYKSEADRGQWKSPPRTSRSPPGSRSRSADLSPRRGR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01605 285 MobiDBLite consensus disorder prediction 1 51 - -
Car02g01605 285 MobiDBLite consensus disorder prediction 198 227 - -
Car02g01605 285 SUPERFAMILY RNA-binding domain, RBD 46 156 IPR035979 GO:0003676
Car02g01605 285 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 25 283 - -
Car02g01605 285 Gene3D - 43 189 IPR012677 -
Car02g01605 285 MobiDBLite consensus disorder prediction 155 194 - -
Car02g01605 285 MobiDBLite consensus disorder prediction 129 285 - -
Car02g01605 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Car02g01605 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Car02g01605 285 MobiDBLite consensus disorder prediction 261 275 - -
Car02g01605 285 PANTHER OS02G0252100 PROTEIN 25 283 - -
Car02g01605 285 SMART rrm1_1 51 124 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01605 Car-Chr2 43870122 43874428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01605 32 112 Eukaryotic Initiation Factors Gene Family AT3G11400 35.802 6.22e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01605 K12900 - gmx:100804294 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01605 02 43870122 43874428 Car02g01605 02 43870122 43874428 ECH