Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01599 ATGGCTAAGTTCAATAACATCATAACCATTGTCACCACCTTAACCCTTCTTCTCACTACAACCGAAGCCAGAATCCCCGGTGTCTACACCGGAGGCGCATGGCAAACCGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACAATGGGAGGCGCGTGTGGATACGGAAATTTGTATAGTCAAGGGTATGGAGTGAACACAGCGGCATTGAGCACAGCGTTGTTTAACGAAGGGTTAAGTTGTGGCGCGTGTTTTGAGATCAAGTGTTCTGATGATCCTAATTGGTGCCACGCTGGCAGTCCTTCTATTTTGGTAACAGCTACAAATTTTTGTCCACCAAATTATGCTCAACCAAGTGATAATGGTGGATGGTGTAATCCTCCAAGACCACATTTTGATCTTGCTATGCCTATGTTTCTTAAAATTGCTCAGTATCGTGCTGGCATTGTTCCTGTTTCTTACCGCCGGGTACCTTGTAGAAAGCAAGGAGGTATAAGATTCACAATAAACGGTTTCCGTTACTTCAACTTGGTTTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGACGAGCGTTAAAGGTTCAAAGAGTGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAATTGGCAATCAAACGCTATTTTGATTGGTCAGTCACTTTCGTTTAGAGTGACAGCCAGTGATCGACGCACTTCCACTTCTTGGAACATTGTTCCTTCTAATTGGCAATTTGGTCAAACTTTTACTGGCAAGAATTTCCGGGTTTAG 783 0.4598 MAKFNNIITIVTTLTLLLTTTEARIPGVYTGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNEGLSCGACFEIKCSDDPNWCHAGSPSILVTATNFCPPNYAQPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKTSVKGSKSGWMSMSRNWGQNWQSNAILIGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01599 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Car02g01599 260 Gene3D - 166 258 IPR036749 -
Car02g01599 260 PANTHER EXPANSIN-A4 8 259 - -
Car02g01599 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Car02g01599 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Car02g01599 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Car02g01599 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Car02g01599 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Car02g01599 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Car02g01599 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Car02g01599 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Car02g01599 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Car02g01599 260 SMART dpbb_1 69 156 IPR007112 -
Car02g01599 260 PANTHER EXPANSIN-A15 8 259 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Car02g01599 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Car02g01599 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Car02g01599 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Car02g01599 260 Gene3D - 21 162 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01599 Car-Chr2 43825692 43827946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01599 8 260 Expansin Gene Family AT2G39700 84.190 8.37e-168 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01599 - - gmx:100809018 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01125 03 53244657 53248033 Car02g01599 02 43825692 43827946 ECH
Car06g03594 06 67277624 67280565 Car02g01599 02 43825692 43827946 ECH
Car01g02587 01 51556806 51558744 Car02g01599 02 43825692 43827946 ECH
Car02g01599 02 43825692 43827946 Car02g01599 02 43825692 43827946 ECH