Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01592 ATGTCTTCACATTGGTGTTACAGATGCAATAAATTTGTTACGGATGTATCGAGGCTAGGCATGCCAGTATGTCCTGATTGTGATAGTGGATTTGTTGAAGAGCTTGAACATTCAACACGTTATCTTCATACAGACGGTGGACGTCAAAGGAGGAGGTTCCCCATGGCGGCCGCCATGTACATGATCGGCAACCACAATAACAACCCTAATCAAACTTCTCGTCGGAGACATTGCAGAAACAATCTTAATGGAGGTGATCATCCCCCGTTTAACCCCATCATCATGCTCCGTAGCAGCGGATCCCCTGACGGGTCGAGTCGCGAGGGAGGAGAGGGTCACGGGTTTGAGCTTTTCTACGAAGATGGTGTTGGTTCCGGTCTTCGACCATTACCTCCAAGGATGTCGGAGTTTCTTCTTGGTTCTGGATTCGAAAGGGTGATCGAACAAATTTCTCATGTCGATTCCCATCGTAGTGGAAATGGGAGTCACGACCGGCAACAACTCCCAGCGTCAAAAGTCGCTGTGGAGTTATTACCGACGATTAAAATCGATGAAACACATATGGTTACTGAATCACATTGTGCTGTTTGCAAGGAACCTTTTGAGCATGGCATTTCTGCAATGGAAATGCCATGCAAACATATATACCACCGTGAATGCATTATTCCATGGCTTGAAATTCGCAATTCTTGTCCCGTTTGTCGCCATGAAATACCTTGTGAAGAATCACCACATAATAACAATAACAATAACATGTTCACTTTGAACGAGGAAGAGAATGTAGGGTTAACAGTTTGGAGGTTACCGGGTGGTGGGTTTGCAGTTGGAAGATTTTCTAGTGGATCAAGAAGAAATGGTGATGATAATGAGATTGAGAGAGAGGTTCCCATTGTTTACACAGAAGTGGATGATGCATTTAATAATGTTGGTGAACCAAGGAGGATTTCATGGTCATTGGCATCATCTAGAAGAAGGAGTAGTAGAGGTGGTGGATTTCGAAGAATGTTGAACAATTGGTTTGGATGTTTGGGAGGTGGTAGTGGTGGAGCTAGGAGTCAACGTTCAATTTCTACTACTAGAGATTTGTCTCTACCTATGTCTAATTTGAGGAGTATAAGTGGATCTCGCACCAATGGCTTGAATTCCTATCAACGTACACGCAGAACTTGGTCTATGGATGTAAATGGTGGAATGAGACCATGGTAA 1206 0.4395 MSSHWCYRCNKFVTDVSRLGMPVCPDCDSGFVEELEHSTRYLHTDGGRQRRRFPMAAAMYMIGNHNNNPNQTSRRRHCRNNLNGGDHPPFNPIIMLRSSGSPDGSSREGGEGHGFELFYEDGVGSGLRPLPPRMSEFLLGSGFERVIEQISHVDSHRSGNGSHDRQQLPASKVAVELLPTIKIDETHMVTESHCAVCKEPFEHGISAMEMPCKHIYHRECIIPWLEIRNSCPVCRHEIPCEESPHNNNNNNMFTLNEEENVGLTVWRLPGGGFAVGRFSSGSRRNGDDNEIEREVPIVYTEVDDAFNNVGEPRRISWSLASSRRRSSRGGGFRRMLNNWFGCLGGGSGGARSQRSISTTRDLSLPMSNLRSISGSRTNGLNSYQRTRRTWSMDVNGGMRPW 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01592 401 Pfam zinc-ribbon 3 35 IPR039525 GO:0061630
Car02g01592 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 241 IPR013083 -
Car02g01592 401 SUPERFAMILY RING/U-box 178 250 - -
Car02g01592 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 341 - -
Car02g01592 401 SMART ring_2 194 234 IPR001841 -
Car02g01592 401 CDD RING-H2_RNF126_like 194 235 - -
Car02g01592 401 Pfam Ring finger domain 193 235 IPR001841 -
Car02g01592 401 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Car02g01592 401 Pfam Protein of unknown function (DUF1117) 261 357 IPR010543 -
Car02g01592 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01592 Car-Chr2 43687275 43689188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01592 129 253 C3H Transcription Factor Family AT5G01980 35.200 2.72e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01592 - K11982 gmx:100789228 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car02g01592 02 43687275 43689188 Car02g01592 02 43687275 43689188 ECH