Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01584 ATGGAGGGATATCACTCTGATCAATATTGGTTTTGGATGAAGAGGAGACAAATTCTTACATCAAATCTTCAACTTCAAGCATCAAATGGAAACAACAACAAAAACAATTCTTGGGAAGAAAGAGCTTTTGCAGAAGATGCAGCTAGAAATATTCTCAATGGTAGCATATGGCCACCAAGATCATACTCATGCAACTTTTGTAAAAGAGAGTTTAGGTCAGCTCAAGCTCTTGGTGGTCACATGAATATTCATAGAAGAGACAGAGCTAGACTCAAACAAAATCATGATCAAGAATCACTTTTTGATCATCATCATCAAAAGAAGAATATTAATAATGATTTTGGTAATCATTATTTTTCTTCAAAAATAATGTCATCTCATATAGATTCTTATAATCATTATCAAATTATTAAACCTTGTTCAACAAGAAGAAGATCTATTTCACCTTCTAGAATGATatcatcatcatcatcatcattacataatgatTGTGTTGAAACAAGTTTGTCTTTGGGATTGACTTCAATGTTTGGACAAAAAACATCATCATCAAATGTTGTTCCTTGTGAGGAAAAAGTTAAAAGGTTGAAGACTACTAACAACATTTCTTCATTGCATTCTGTTTTCTTCAAGACATGTTCAAATGATCATCATCATGGAATGGAAGATTTAGATCTTGAACTTAGGTTAGGGAAACAACAGAAAGTTAAGTAG 714 0.3081 MEGYHSDQYWFWMKRRQILTSNLQLQASNGNNNKNNSWEERAFAEDAARNILNGSIWPPRSYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNHDQESLFDHHHQKKNINNDFGNHYFSSKIMSSHIDSYNHYQIIKPCSTRRRSISPSRMISSSSSSLHNDCVETSLSLGLTSMFGQKTSSSNVVPCEEKVKRLKTTNNISSLHSVFFKTCSNDHHHGMEDLDLELRLGKQQKVK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01584 237 PANTHER OS07G0101800 PROTEIN 1 236 - -
Car02g01584 237 Pfam C2H2-type zinc finger 62 86 - -
Car02g01584 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Car02g01584 237 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
Car02g01584 237 SMART c2h2final6 62 84 IPR013087 -
Car02g01584 237 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Car02g01584 237 Gene3D Classic Zinc Finger 58 122 - -
Car02g01584 237 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01584 Car-Chr2 43553228 43554024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01584 32 97 C2H2 Transcription Factor Family AT2G37740 72.727 4.67e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car02g01584 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01584 - - lja:Lj0g3v0352099.1 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g02638 06 33114933 33116171 Car02g01584 02 43553228 43554024 ECH
Car02g01584 02 43553228 43554024 Car02g01584 02 43553228 43554024 ECH