Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01580 ATGAAGATTTTTCCTACAACGTTGGAGGACAATGATAGAGAGACAAGAACAATAGCCGTACGAAAAGCCTTGGAGCTGTTACAGCTCGACGATCAGGATTTGGGGATCCAAGCCGCTAAGAATATCCGCCGCCTCACCAAAACATCCAGTTGTTGCCGCCGTCAGCTCCGTCAAGTTGTCGCTCCACTTGTCTCATTGCTCCGAGTCGACTCACCCGAGTCCCACCAACACGCTCTTCTTGCTTTGCTTAACCCGCCGTCCAAGACGAAACGTACGCTCGCTACTCCAACTATGAACAAAATTAACATTGTGCAAGCAGGTGCATTAGAACCAATAGTTAATTTTCTCTCTTCACAAAATAAAAATCTTCAAGAGTATGCAACTGCATCATTGCTTACTCTATCAGCCTCAAAAACAAACAAAGCAATCATCACTTCTTATGAAACAATTCCACTTCTTATTAACATTCTTAGAGATGGAAGCCACCAAGCCAAAACAGATGCAATAATGGCTCTATCCAATTTATCAACACACTTTGACAACATCATCACTATACTAGAATCAAATCCAATTCCATTCATAGTTAACATTCTCAAAACCTCTAAAAAATCCTCAAAAACAGCTGAAAAATGTTGTTGTTTGATAGAATCCTTGGTTGATTATGAAAAAGGAAGAGTCTTCTTATCGTCTGAACAAGGCGGCGTTCTTTCGGTTGTTGAAGTTCTTGAAAATGGAACACAACAAAGTAAGGAACATGTTGTTGGAACATTGTTGAAAATGTGTCAAAGTGATAGATTAAAGTACAAGGAACCAATTTTGAGGGAAGGTGTTATTCCAGGACTTCTTGAACTTACTGTTCAAGGAACAATGAAGTCTAGGACAAAAGCATGTACCCTTTTGCATCTACTAAGAGATTATGATATTAATACAGAATGTGACACTCTTGATCACATGATTTGTAATATTATAGCTAAGATTGATGGTGATGATCATCAATGTGGTAAAGCTAAGAAGATTCTGGTTGAGATGGTTCAAGTTAGTATGGAAAAGAGTTTGAGACATTTACAACAAAGAGTTTTTCTATGCACCACAAGTGACGTGTCTATTACTAATTTTAGTTGTGCTTCTCAAGTCTCTTTTAAATGA 1146 0.3831 MKIFPTTLEDNDRETRTIAVRKALELLQLDDQDLGIQAAKNIRRLTKTSSCCRRQLRQVVAPLVSLLRVDSPESHQHALLALLNPPSKTKRTLATPTMNKINIVQAGALEPIVNFLSSQNKNLQEYATASLLTLSASKTNKAIITSYETIPLLINILRDGSHQAKTDAIMALSNLSTHFDNIITILESNPIPFIVNILKTSKKSSKTAEKCCCLIESLVDYEKGRVFLSSEQGGVLSVVEVLENGTQQSKEHVVGTLLKMCQSDRLKYKEPILREGVIPGLLELTVQGTMKSRTKACTLLHLLRDYDINTECDTLDHMICNIIAKIDGDDHQCGKAKKILVEMVQVSMEKSLRHLQQRVFLCTTSDVSITNFSCASQVSFK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01580 381 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 107 144 IPR000225 GO:0005515
Car02g01580 381 Gene3D - 6 347 IPR011989 -
Car02g01580 381 PANTHER U BOX DOMAIN-CONTAINING 12 338 - -
Car02g01580 381 SMART arm_5 96 136 IPR000225 GO:0005515
Car02g01580 381 SMART arm_5 48 87 IPR000225 GO:0005515
Car02g01580 381 SMART arm_5 137 177 IPR000225 GO:0005515
Car02g01580 381 SMART arm_5 178 220 IPR000225 GO:0005515
Car02g01580 381 SMART arm_5 264 305 IPR000225 GO:0005515
Car02g01580 381 Pfam Armadillo/beta-catenin-like repeat 99 135 IPR000225 GO:0005515
Car02g01580 381 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 338 - -
Car02g01580 381 SUPERFAMILY ARM repeat 19 304 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01580 Car-Chr2 43510738 43516680 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01580 22 305 U-box Gene Family AT3G54790 32.404 8.10e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01580 - - gmx:100780954 450.284