Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01570 ATGGCACTAGCCAACAAAAATATTcttcatgcttcaagcctaagtaccaagtttcaaacttTTATTTTTGATGAAGAGACTAATACTATGGAGATTAACTCTTTAATGTCTCATGGTGTCAATGATTACCAAAAATCAATGGTTGAAGATGAAGATGGTTCACAAAGTACTAATGGTCTAAGCAATGATTCAGCTTCAGCTTCAGCTACTACACATTCTCCAACTCTTTGTGGAAGTAGCACAAAAGGGTATGTTTATAACAACACAAGTTATCAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGAGTACTATAGCAATCTTGTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAACAGAGCTGGATGGTGTCCAATGACAATAATTTGCAAGAATGGAATCATGTTAGTCCTAAAAGCACTACTAACTTGTGCATGGTGGAAGGTTTGAGTAACTTAGAAACTTCAAGTGGTTGCTATGGATCCATATTCAAAGAGAAGCAAAGTGGTGAAAGTTCATGTGGTTGGTTATATTCGGAACCAAATGTTCCTTGTGATGATCATAGCCTAATAAACGAGTCGGCAACACACGAATCAATATCGGTCTTCAAGAAGCGCTCATCTATGGGAGAGAACATGCAACCTGCCAATGCCAAGAAGCCATGCACAATTGCAAGTAAAACAGAAAAACATAAGTCAAACCCATCAAAAGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCTAATGGTTCTAAGGTTGATTTAGTTACTATGTTGGAGAAAGCAATTAGTTATGTAAAGTTTCTTCAATTGCAAGtgaagGTTTTGGCAGCTGATGAACTTTGGCCTATTCAATGTGGAAAAGCTCCTGACATTGGTCAAGTAAAACAAGCAATTGATGCCATTCTTTCATCTCAACAATGA 981 0.3558 MALANKNILHASSLSTKFQTFIFDEETNTMEINSLMSHGVNDYQKSMVEDEDGSQSTNGLSNDSASASATTHSPTLCGSSTKGYVYNNTSYQLDEEESLINFKGNEYYSNLVMQGSESLLSFQQSWMVSNDNNLQEWNHVSPKSTTNLCMVEGLSNLETSSGCYGSIFKEKQSGESSCGWLYSEPNVPCDDHSLINESATHESISVFKKRSSMGENMQPANAKKPCTIASKTEKHKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADELWPIQCGKAPDIGQVKQAIDAILSSQQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01570 326 Gene3D - 232 296 IPR036638 GO:0046983
Car02g01570 326 MobiDBLite consensus disorder prediction 48 74 - -
Car02g01570 326 Pfam Helix-loop-helix DNA-binding domain 249 289 IPR011598 GO:0046983
Car02g01570 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Car02g01570 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 324 - -
Car02g01570 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 297 IPR036638 GO:0046983
Car02g01570 326 MobiDBLite consensus disorder prediction 50 74 - -
Car02g01570 326 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 324 - -
Car02g01570 326 MobiDBLite consensus disorder prediction 231 250 - -
Car02g01570 326 SMART finulus 245 294 IPR011598 GO:0046983
Car02g01570 326 CDD bHLH_AtIND_like 240 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01570 Car-Chr2 43420723 43422676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01570 82 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 43.243 1.58e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car02g01570 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01570 - - gmx:106795957 374.015