Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car02g01566 ATGGTTCTATCATGGACCAAAGGTAGTAGAGTTTTCCGTCGTGCACGAAAGGGAAAAGACATACTAAATTCAAGCAACGATTTACAAGTTGAGATAGCAATTCCAACTCATTTCCGTTGCCCCATAACACTAGACATAATGAAAGATCCCGTTACACTCTCCACCGGTATAACCTACGACAGAGACAGCATCGAAAAATGGATCGAATCAGGTAACAACACGTGTCCCGTCACAAAAACAGAGTTATTATTACCAACTAACTTCGACAACATCGTACCTAATCACTCCCTTCGTAGAATGATTCAAGATTGGTGCGTCCAACACCGTTCTTACGGCGTCGAACGAATCCCAACTCCTCGTATCCCCGTTACACCGTACGAGGTTACCGACACGTGTACGAGGATACTGTCTGCCGTGCAACAAGACGAACAACAAAAGTGTTTTGAATTGGTGAAAAAAATAAAGGGTTGGGGAAAAGAGAGTGAGAGGAATAAAAAGTGTATAGTTTCAAATGGTGCTCCAATTGTTCTAGCTAATGTTTTTGATTCTTTCTCACGTTGTTCATTTGAGAAGATTAATGTTGTTCTTTTGGAAGAGGTTTTGGGGATGCTGACGTGGATGCGTCCTGTTTCTGAACAGAGTAGATTAATTTTGGGATCTTTGAATTCTTTGAGTTGCATGGTTTGGTTCTTGAATGATAAAAATCAAGTTTCAACTAGACAAAATGCTTCTTTGTTGATTAAAGAAATGCATGTTGAGTCATTGATGAAAATTGAAGGGATTGTTGAAACTTTAGTGAACATGGTTAAGGTTCCTATTGGGAGTGCTTCTACAAAAGCATGTTTGTCAACAATTTTTCACTTGGTTTTCTCATCCAAGAGTAAAAAAGTGGTTTTGGAGAGGTTTGTTGAATTGGGTTTGGTTTCAATTTTATTGGAGATTATTGTTGATGCTGAAAAAGGGGTATGTGAGAAAGCTTTAGGGGTGTTGGATTCTCTTTGTGATAGTACAAATGGGGTGGGAATAGCAAAGTCAAATGCTTTGACTTTGCCTTTAGTGATTAAGAAGCTTTTAAGAGTGTCTGAACTGAGTTCAAGTTTTGTTGTTTCTATTGTTTACAAGATTTGTTGTGATAATAAGGGGGAGGAAGAAGGTGTTTTGATTGAGGCAATTCAAGTTGGGATGTTTCAGAAATTGCTTGTTTTACTGCAAGTTGGTTGTGGTGAGAATACAAAGGAGAAAGCTACTGAGTTGTTGAAATTGTTGAATGGTTATAGGAGCAAAGCTGAGTGCGTTGATTCATCATCATTGGATTTCATGCACCTTAAGAAGCCATTTTGA 1341 0.3848 MVLSWTKGSRVFRRARKGKDILNSSNDLQVEIAIPTHFRCPITLDIMKDPVTLSTGITYDRDSIEKWIESGNNTCPVTKTELLLPTNFDNIVPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVTPYEVTDTCTRILSAVQQDEQQKCFELVKKIKGWGKESERNKKCIVSNGAPIVLANVFDSFSRCSFEKINVVLLEEVLGMLTWMRPVSEQSRLILGSLNSLSCMVWFLNDKNQVSTRQNASLLIKEMHVESLMKIEGIVETLVNMVKVPIGSASTKACLSTIFHLVFSSKSKKVVLERFVELGLVSILLEIIVDAEKGVCEKALGVLDSLCDSTNGVGIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICCDNKGEEEGVLIEAIQVGMFQKLLVLLQVGCGENTKEKATELLKLLNGYRSKAECVDSSSLDFMHLKKPF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car02g01566 446 CDD RING-Ubox_PUB 38 79 IPR045210 -
Car02g01566 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 115 IPR013083 -
Car02g01566 446 SUPERFAMILY RING/U-box 30 114 - -
Car02g01566 446 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 446 - -
Car02g01566 446 ProSiteProfiles U-box domain profile. 33 111 IPR003613 GO:0004842|GO:0016567
Car02g01566 446 SMART Ubox_2 37 104 IPR003613 GO:0004842|GO:0016567
Car02g01566 446 SUPERFAMILY ARM repeat 134 420 IPR016024 -
Car02g01566 446 PANTHER WDSAM1 PROTEIN 9 446 IPR045185 GO:0061630
Car02g01566 446 Pfam U-box domain 34 109 IPR003613 GO:0004842|GO:0016567
Car02g01566 446 Gene3D - 130 424 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car02g01566 Car-Chr2 43390753 43392559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car02g01566 31 446 U-box Gene Family AT5G37490 44.681 1.95e-110 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car02g01566 - - gmx:100795913 635.18